Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00549 ATGGAAGAGGTTCCAAAGGAAAAGGAAGAAGATCAGGAGGAGAAGGAAAAAGGTGAAGTTCGATATAGAGGTGTTCGAAGGCGGCCGTGGGGGAAATATGCCGCCGAAATACGCGACTCGTCTAGACACGGCATGCGTCTGTGGCTAGGAACGTTTTATACTGCCGAGGACGCGGCACGTGCATATGATCGAGCCGCGTTTGCAATGAGGGGTCATCTTGCTATCCTTAATTTCCCTGATGAGTATTCTTCTTCTTCTTCTACTTCTACTTCAGCTGCTCTCAGTGACAATGTTGAGAAGGAGAACACTTCCACAAGGCAAGAACAAGAAGTTATCGAATTCGAGTATTTGGACAATAAGTTGTTGGAGGAGCTTCTTGAGTCAGAGGACACAAAAAGCAAGAAAGGAGCCCCTAAAGATTCCTATGAGGTGAGTGGTGTTTCCGACATGCATCCGATTAGTCATGATGGAGTGGATGTGGATATAGCACTAGGTGAGGTATTGTTACAAGATGAGCATCATGTAGTTTACGAAAGACGAAAGCTTAATGATGTTGAAAAGCGCTACACTGCACAAGAAAATATGCATTGCTTGGTTGAAGACGACGACGATGATGATGATGATGATGATGGCGTCGTCGACGACGAAGGTCTAAGAGGGGTTGAGTTAGAATTTGGGGAATGA 684 0.4547 MEEVPKEKEEDQEEKEKGEVRYRGVRRRPWGKYAAEIRDSSRHGMRLWLGTFYTAEDAARAYDRAAFAMRGHLAILNFPDEYSSSSSTSTSAALSDNVEKENTSTRQEQEVIEFEYLDNKLLEELLESEDTKSKKGAPKDSYEVSGVSDMHPISHDGVDVDIALGEVLLQDEHHVVYERRKLNDVEKRYTAQENMHCLVEDDDDDDDDDDGVVDDEGLRGVELEFGE* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00549 227 SUPERFAMILY DNA-binding domain 21 81 IPR016177 GO:0003677
Eupl12g00549 227 MobiDBLite consensus disorder prediction 198 215 - -
Eupl12g00549 227 SMART rav1_2 21 85 IPR001471 GO:0003700|GO:0006355
Eupl12g00549 227 MobiDBLite consensus disorder prediction 80 100 - -
Eupl12g00549 227 Pfam AP2 domain 21 72 IPR001471 GO:0003700|GO:0006355
Eupl12g00549 227 MobiDBLite consensus disorder prediction 80 109 - -
Eupl12g00549 227 MobiDBLite consensus disorder prediction 1 21 - -
Eupl12g00549 227 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Eupl12g00549 227 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Eupl12g00549 227 PANTHER DNA-BINDING DOMAIN 10 132 IPR044808 GO:0003700|GO:0009873
Eupl12g00549 227 MobiDBLite consensus disorder prediction 196 227 - -
Eupl12g00549 227 MobiDBLite consensus disorder prediction 128 150 - -
Eupl12g00549 227 FunFam Ethylene-responsive transcription factor 2 20 80 - -
Eupl12g00549 227 ProSiteProfiles AP2/ERF domain profile. 21 79 IPR001471 GO:0003700|GO:0006355
Eupl12g00549 227 Gene3D AP2/ERF domain 20 80 IPR036955 GO:0003700|GO:0006355
Eupl12g00549 227 CDD AP2 21 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00549 Eupl-Chr12 19029255 19038907 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00549 19 132 AP2-EREBP Transcription Factor Family AT3G23230 60.656 4.71e-44 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Eupl12g00549 AP2 4.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00549 - - aew:130759923 157.532