Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00548 ATGGATTCTTCTTTATTTCAATTCCAACATTCCCAATTCTCGCCGGAATCATCGTTGGGATCGCCGGATTCATTCTCGTGGAACGGGTTTGTTTTCAATGAAGAATCCCTTCCCTTCAACGAAAACGACTCAGGAGAGATGCTTCTCTTAGAAGTTCTAACGGACGCCGCGAAAGCAGCATCGGATACCCTTTTCGCCACTCGAATTAAGGATGAAGAAGTTAGTTCCAAGAAGAAAGAAGAATCGAAGACGAAGGAGAAGTCCTTCAGAGGCGTTCGAAGGCGGCCTTGGGGGAAATTCGCGGCGGAGATAAGGGATTCTACTAGGCATGGTGTACGAGTTTGGCTCGGGACATTCGATAGTGCCGAGGCAGCTGCTTTGGCTTATGATCAAGCTGCGTTTTCGATGCGGGGATCGATGGCTGTCCTAAATTTTCCAGTCGAACATGTCCGGGAGTCGCTTCGAGACATGAAGTATGGTTGTGAAGATGGTTGTTCACCTGTGGTGGCTCTGAAGAAGACACACTCCATGAAGAGAAAATCTGTGAGTAAGAAAAACAAAGGGAGAGATGTTAGGACTGAGAATGTAGTGGAATTGGAGGACTTGGGGGCTGATTACTTAGAGGAGCTCCTAAGTTCATCTGAGAGTACCAGTGGTATTACTAGTTCTTGGTGA 675 0.4711 MDSSLFQFQHSQFSPESSLGSPDSFSWNGFVFNEESLPFNENDSGEMLLLEVLTDAAKAASDTLFATRIKDEEVSSKKKEESKTKEKSFRGVRRRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGSMAVLNFPVEHVRESLRDMKYGCEDGCSPVVALKKTHSMKRKSVSKKNKGRDVRTENVVELEDLGADYLEELLSSSESTSGITSSW* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00548 224 FunFam Ethylene-responsive transcription factor 2 87 148 - -
Eupl12g00548 224 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700|GO:0006355
Eupl12g00548 224 PANTHER DNA-BINDING DOMAIN 63 215 IPR044808 GO:0003700|GO:0009873
Eupl12g00548 224 Pfam AP2 domain 89 138 IPR001471 GO:0003700|GO:0006355
Eupl12g00548 224 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Eupl12g00548 224 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Eupl12g00548 224 MobiDBLite consensus disorder prediction 1 22 - -
Eupl12g00548 224 SMART rav1_2 88 152 IPR001471 GO:0003700|GO:0006355
Eupl12g00548 224 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700|GO:0006355
Eupl12g00548 224 CDD AP2 89 147 IPR001471 GO:0003700|GO:0006355
Eupl12g00548 224 SUPERFAMILY DNA-binding domain 89 148 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00548 Eupl-Chr12 19010197 19011085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00548 1 217 AP2-EREBP Transcription Factor Family AT3G23240 56.306 1.22e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Eupl12g00548 AP2 1.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00548 K14516 - nnu:104600859 317.39