Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00542 ATGAGCGAAGGTTTGAAGAGGGATTACCAGGTTTGCGAGGAGATCGGGCAGGGAAGATTCGGTACCGTTTTCCGGTGCTTTTCTCCGGAATCCGGCGACTTCTTCGCCTGCAAATCGATCGACAAGCGTCTCCTTTCCGATTCCATCGACCGAGAATGCTTGGAGAAGGAAGCCAAGATCATGCAGATCGTTAGCGGAAACCCTAACGTCGTTCAGATCTTCAACGTTTACGAAGATGAAAACTACCTCAACATGATTGTTGAGCTTTGTGACTCTTCCGATCTTTTCGATCGCGTATCCAAACATATCTTCTCTGAGACTGAAGCGGCCGCCGTTATGTCCCCGTTAATGGAAGCGATCGCACACTGTCACCGGCGTGGCGTCGCTCACCGAGATATCAAGCCGGATAACATACTTTTCGACGGACGGAACCGACTGAAACTCGCGGATTTTGGATCCGCTGATTGCTTTCACGAGGGCCATTCGATGAGAGGGATCGTTGGAACACCGTATTATGTTGCTCCGGAGGTCATTTCTGGGAGGGACTACAATGAGAAGGTTGATGTGTGGAGCGCTGGGGTTATTCTGTATATAATGTTGGCCGGAATCCCGCCGTTTTACGGCGAGTCCGCGGCGGAGATATTTGAGGCGGTGCTCCGTTCAAATCTCCGGTTTCCTACACGGATCTTTCATGCAGTATCTCCAGCGGCGAAGGATCTTTTGCGGAGGATGCTCTGTAAGGACGTTTCGAGAAGATTCTCGGCAGAGCAAGTTCTTAGACATCCGTGGATTACAAGCCGAGGAGAAGCAAGATCCATCACCGACCTGACCTGA 834 0.5108 MSEGLKRDYQVCEEIGQGRFGTVFRCFSPESGDFFACKSIDKRLLSDSIDRECLEKEAKIMQIVSGNPNVVQIFNVYEDENYLNMIVELCDSSDLFDRVSKHIFSETEAAAVMSPLMEAIAHCHRRGVAHRDIKPDNILFDGRNRLKLADFGSADCFHEGHSMRGIVGTPYYVAPEVISGRDYNEKVDVWSAGVILYIMLAGIPPFYGESAAEIFEAVLRSNLRFPTRIFHAVSPAAKDLLRRMLCKDVSRRFSAEQVLRHPWITSRGEARSITDLT* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00542 277 CDD STKc_CAMK 8 263 - -
Eupl12g00542 277 SMART serkin_6 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl12g00542 277 SUPERFAMILY Protein kinase-like (PK-like) 6 266 IPR011009 -
Eupl12g00542 277 Pfam Protein kinase domain 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl12g00542 277 FunFam Phosphoenolpyruvate carboxylase kinase 1 1 91 - -
Eupl12g00542 277 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Eupl12g00542 277 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Eupl12g00542 277 FunFam Phosphoenolpyruvate carboxylase kinase 2 1 275 - -
Eupl12g00542 277 PIRSF ILK 3 261 - -
Eupl12g00542 277 ProSiteProfiles Protein kinase domain profile. 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl12g00542 277 Gene3D Transferase(Phosphotransferase) domain 1 2 275 - -
Eupl12g00542 277 PANTHER SERINE/THREONINE-PROTEIN KINASE 5 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00542 Eupl-Chr12 18855799 18857972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00542 3 270 EF-hand Containing Proteins AT1G50700 43.382 8.52e-80 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Eupl12g00542 Pkinase 1.1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00542 - K08794 nnu:104610021 500.36