Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00537 ATGGTGCGAGCTCCTTGTTGTGAGAAGATGGGATTGAAGAAGGGGCCATGGACTACTGAAGAAGACCAGACCTTGATCGGTTACATTCAACGTTACGGCCATGGTAATTGGCGGGCTCTTCCGAAACAAGCTGGTCTATTGAGGTGTGGGAAGAGTTGCAGACTCCGATGGACCAATTACTTGAGACCGGATATTAAACGAGGGAATTTTAGCAAAGAAGAAGAGGAAACTATCATCAAATTGCATGAAATGCTAGGGAATAGATGGTCTGCGATAGCAGCGAGATTACCGGGACGAACAGACAATGAAATTAAAAATGTCTGGCATACCCACTTGAAGAAAAGACTCAAACAAAATCAGGTCACCCCCGAAACGAAACAATACTCGGTTGAATTATCAAAATGTGAAGTCTACACAAAGAGAGAATCAGAATCGGTGAATTTTCCGACAGAATCGAGATTCGAGAATCCAAGCTATGTCCAGTGTCCCCACAACAGTCTTCCAGTGAATACTCTTCAATCACAGATTCATCAGTCGTAA 540 0.4352 MVRAPCCEKMGLKKGPWTTEEDQTLIGYIQRYGHGNWRALPKQAGLLRCGKSCRLRWTNYLRPDIKRGNFSKEEEETIIKLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQNQVTPETKQYSVELSKCEVYTKRESESVNFPTESRFENPSYVQCPHNSLPVNTLQSQIHQS* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00537 179 Gene3D - 13 66 - -
Eupl12g00537 179 CDD SANT 69 112 IPR001005 -
Eupl12g00537 179 CDD SANT 16 61 IPR001005 -
Eupl12g00537 179 Gene3D - 69 142 - -
Eupl12g00537 179 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Eupl12g00537 179 SMART sant 66 114 IPR001005 -
Eupl12g00537 179 SMART sant 13 63 IPR001005 -
Eupl12g00537 179 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 144 - -
Eupl12g00537 179 FunFam MYB-related transcription factor 13 66 - -
Eupl12g00537 179 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Eupl12g00537 179 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Eupl12g00537 179 FunFam Transcription factor MYB15 68 144 - -
Eupl12g00537 179 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Eupl12g00537 179 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Eupl12g00537 179 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Eupl12g00537 179 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00537 Eupl-Chr12 18791638 18793836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00537 1 119 MYB Transcription Factor Family AT2G31180 83.193 4.57e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl12g00537 Myb_DNA-binding 3.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00537 K09422 - nnu:104610016 275.018