Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00526 ATGCCGTCCTTAATTTCTCCCGGGAGAATACTCCGTTTGGAGCTTGAGAACTTTAAATCCTACAAAGGCCTACAAGTTATTGGCCCTTTTTACGATTTTACTGCGGTCATCGGTCCGAATGGCTCTGGAAAATCCAATCTCATGGATGCCATAAGTTTCGTTCTCGGTGTTCGATCGGTTCAGTTGCGAGGTGCGCAGCTGAAGGACTTGATTTATGCGTTTGATGATAAGGAGAAGGAGCAGAAAGGGAGAAAGGCGTTTGTTCGGCTTGTTTATCAAATAGGGAACGGATTAGAGCTTCAATTCACACGGACCATCACGAGTTCTGGGGGAAGCGAGTATAGGCTTGATGGGAAGATTGCGACGTGGGATGAATATAACAGTAAGCTGAAATCGCTTGGTATTCTCGTCAAGGCGCGTAATTTTCTCGTTTTTCAGGGTGATGTGGAGTCGATTGCCTCCAAGAATCCCAAGGAACTTACTGCACTACTCGAGCAGATCTCTGGGTCTGATGACCTTAAGAAAGACTATGAGGATCTGGAAGAACAAAAGGCCAGGGCTGAAGAAAAATCAGCACTTATTTATCAGAAAAAGAGAACAATAGTCATGGAGAGAAAGCAGAAAAAAGAGCAGAAAGAAGAGGCTGAGAAACATCTTCGCTTGCAAGATCAACTGAAATCTGTAAAGAAAGAACATTTTTTGTGGCAATTATTAAATATCGAAAAGGATATGGAGAAGACGAACACTGACCTTGAAGCTGAAAAACATAACCGTGAAGATGTTCTGAAGGAGCAAGAGACATGCGACCTTGAAGAGACTGGCAGAAAAAAAGAACAAGCTGGATACTTGAAAGAGATTATGTTATGTGAAAAGAAGATTGTGGATAAGAAAAATAAACTTGATAAGAAGCAACCTGAGCTTCTGAAACTAAAGGAGGAATTTTCTCGCGTTAATTCAAAAATCAAAAGTAGGAGGAAGGAGCTAGATAAAAAGAGAGAAGAGCGGAGGAAGCATGCGGAAGAAATAAAAAAGCTAGAGAGTGACTTCCATGATGTGAAAGAAAAGTTAAATGATCTACATGAAAAAGGCCAAGATGGGGGAGGAAAACTTCAACTAGCCGACAGTCAGCTTGAGGAATATCACAGGATTAAGGAGGACGCTGGGATGAAAACTGCGAAGCTGAGTGATGAGAAAGAGGTTCAGGATAGGCAACAACATGCTGATATTGAAGCTCAAAATAATTTGGAAGAAAATTTTCAACAGTTGAAAAATCGAGAGCAAGAGCTTGAGTCACAGGAGGAACAAATGCAAACGAGATTGAAAAAAATTGTTGATGCATTAGGGAAACATAAGGAAGAGCGCACAAGAGTGAAAAAAGAATTGAGTGAGATGCAAGATAAACACCGGGAATCTAGAAATCGGTATGAATCTTTGAAGGTAAAGATAGGTGAACTTGAAAACCAGCTACGTGAACTGAAGGCTGATAGGTATGAAAATGAACGGGATGCCAGATTGTCTCAAGCAGTTGAGGCTCTCAAACGCCTGTTTCCGGGAGTCCATGGTCGTATAGCTGATCTTTGTAGGCCAACACAAAAGAAGTATAACCTTGCTGTTACTGTTGCCCTGGGTAGATTTATGGATGCCGTTATAGTTGAGGATGAACATACAGGAAAAGAGTGCATTAAGTATTTGAAAGAACAACGGCTTCCTCCTCAGACCTTTATACCTCTAAAATCAATCCGTGTGAAGCCAGTAATTGAGAAGCTGCGCACTTTAGGTGGAACTGCGAAGCTGATCTTTGATGTAATTCAATTTGATCCAGCCTTGGAGAAGGCTATGCTATATGCTGTTGGAAATACCCTAGTTTGTGACAAACTTGAAGAAGCTAGGGATCTTAGCTGGAGCGGGGAGAGGTACAAGGTGGTAACTGTTGATGGGATTCTTCTCACAAAGTCTGGCACAATGACTGGTGGGATCAGTGGCGGAATGGAAGCTAGGTCAAAACAGTGGGATGATAAAAAGATCGAAGGACTTAAAAAAAGTAAAGAACGGTATGAGTCGGAGATGGAAGAACTTGGATCAATTAGAGAGATGCAGATGAAAGAGTCTGAAGCATCTGGAAAAATATCTGGACTTGAAAAGAAGATCCAGTATTCAGAGATCGAGAAGAAAAATATTCAGGACAAGCTTTCAAAATTGAAGCAGGAGAAGCTGAATATTAAAGAAGAGATTAGTAGTATTGAGCCTGAACTTCAAAAGTTAAAAAGTCAAATTGCCAAAAGGACAACAGAAATCAGGAAGCTTGAGAAAAGGATTAATGAGATTGTGGACCGAATCTACAAGGGCTTTAGTGAGTCTGTTGGAGTAAAAAATATCCGTGAGTATGAAGAAAACCAGCTCAAGGGTGCACAACAAATGGCTGAACGAAGGATTGGGCTAAGTACTCAGATGTCAAAATTGAAATACCAGTTGGAGTATGAGCAAAAGCGGGACATGGAGTCACCAATCACGCAGCTGGAATCTTCTCTCAATTCTTTAGACAAAGAATTAAAACAGGTGCAGAAGAAAGACGCAGAAACCAAACTAGTGACAGAGAAAGCTACAAATGAAATAGACCAATTGAATGAAGAAGTTCAGGAGTGGAAGTCCAAGTCAGATGAGTGTGAAAAGGCTATCCAAGAACTGAAGAAGCGACGTACTAGCATTGCAACAAGCATTGGAAAACTGAATCGACAAATAAATTCGAAGGAGACACATATTGAACAGCTGCAATCACAGCAGCAGGAGATATTGGAGAAGTGTGAATTAGAGCAGATAAAACTTCCCACTGTCGCTGACCCAATGGAAACTGGATCGTCTACACCAACACTGGTTTTTGATTATAGTCAGCTCAACAGATCACATCTACAGGAAATGAGAGCATCTGAGCGGGAGAAGCTCGAGGTAGAATTCAAACAAAAAATGGATACCTTAATCTCAGAAATTGAAAGAACAGCTCCCAATTTAAAGGCACTGGACCAATATGAGGCTCTGCAAGAGAAGGAAAGAGCAGTGACTGAAGAGTTTGAATTAGCCAGGAGAGAAGAAAAAGAAGTAACTGACAAGTACAACTCGGTCAAGCAAAGGAGGTATGAACTGTTCATGGAAGCGTTCAACCATATCTCCAATAATATTGACAAGATTTACAAGCAACTTACAAAGAGCAACACTCACCCACTAGGTGGGACAGCATATTTGAACCTAGAAAATGAGGATGATCCTTTCTTACATGGCATCAAGTACACAGCCATGCCCCCAACGAAGCGCTTCCGTGAAATGGAACAGCTATCTGGTGGGGAGAAGACTGTTGCAGCACTTGCTTTGCTCTTTTCAATCCACAGTTATAGGCCTTCTCCGTTTTTTATCTTGGATGAAGTCGATGCCGCATTGGATAATTTGAACGTTGCCAAGGTTGCTGGGTTCATCAGGTCGAAATCATGCGATGGTGCCAGGGGTAATCAAGACTCCGATGGTGGGAGTGGTTTCCAAAGTATTGTTATATCCCTGAAGGATAGTTTTTATGACAAGGCTGAAGCATTGGTCGGAGTTTACAGGGACTCTGAAAGAGGCTGCTCGAGAACACTGACATTTGATCTGACCAAATACCGGGAATCATGA 3657 0.417 MPSLISPGRILRLELENFKSYKGLQVIGPFYDFTAVIGPNGSGKSNLMDAISFVLGVRSVQLRGAQLKDLIYAFDDKEKEQKGRKAFVRLVYQIGNGLELQFTRTITSSGGSEYRLDGKIATWDEYNSKLKSLGILVKARNFLVFQGDVESIASKNPKELTALLEQISGSDDLKKDYEDLEEQKARAEEKSALIYQKKRTIVMERKQKKEQKEEAEKHLRLQDQLKSVKKEHFLWQLLNIEKDMEKTNTDLEAEKHNREDVLKEQETCDLEETGRKKEQAGYLKEIMLCEKKIVDKKNKLDKKQPELLKLKEEFSRVNSKIKSRRKELDKKREERRKHAEEIKKLESDFHDVKEKLNDLHEKGQDGGGKLQLADSQLEEYHRIKEDAGMKTAKLSDEKEVQDRQQHADIEAQNNLEENFQQLKNREQELESQEEQMQTRLKKIVDALGKHKEERTRVKKELSEMQDKHRESRNRYESLKVKIGELENQLRELKADRYENERDARLSQAVEALKRLFPGVHGRIADLCRPTQKKYNLAVTVALGRFMDAVIVEDEHTGKECIKYLKEQRLPPQTFIPLKSIRVKPVIEKLRTLGGTAKLIFDVIQFDPALEKAMLYAVGNTLVCDKLEEARDLSWSGERYKVVTVDGILLTKSGTMTGGISGGMEARSKQWDDKKIEGLKKSKERYESEMEELGSIREMQMKESEASGKISGLEKKIQYSEIEKKNIQDKLSKLKQEKLNIKEEISSIEPELQKLKSQIAKRTTEIRKLEKRINEIVDRIYKGFSESVGVKNIREYEENQLKGAQQMAERRIGLSTQMSKLKYQLEYEQKRDMESPITQLESSLNSLDKELKQVQKKDAETKLVTEKATNEIDQLNEEVQEWKSKSDECEKAIQELKKRRTSIATSIGKLNRQINSKETHIEQLQSQQQEILEKCELEQIKLPTVADPMETGSSTPTLVFDYSQLNRSHLQEMRASEREKLEVEFKQKMDTLISEIERTAPNLKALDQYEALQEKERAVTEEFELARREEKEVTDKYNSVKQRRYELFMEAFNHISNNIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFREMEQLSGGEKTVAALALLFSIHSYRPSPFFILDEVDAALDNLNVAKVAGFIRSKSCDGARGNQDSDGGSGFQSIVISLKDSFYDKAEALVGVYRDSERGCSRTLTFDLTKYRES* 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00526 1218 Gene3D - 816 934 - -
Eupl12g00526 1218 FunFam Structural maintenance of chromosomes 1A 9 224 - -
Eupl12g00526 1218 Pfam RecF/RecN/SMC N terminal domain 10 1199 IPR003395 -
Eupl12g00526 1218 Coils Coil 836 856 - -
Eupl12g00526 1218 Coils Coil 321 362 - -
Eupl12g00526 1218 Coils Coil 412 502 - -
Eupl12g00526 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 259 IPR027417 -
Eupl12g00526 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 1160 IPR027417 -
Eupl12g00526 1218 SMART SMC_hinge_2 517 633 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Eupl12g00526 1218 Coils Coil 675 695 - -
Eupl12g00526 1218 Coils Coil 864 898 - -
Eupl12g00526 1218 Gene3D - 496 577 - -
Eupl12g00526 1218 Coils Coil 237 264 - -
Eupl12g00526 1218 Coils Coil 751 778 - -
Eupl12g00526 1218 Coils Coil 1008 1031 - -
Eupl12g00526 1218 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Eupl12g00526 1218 Coils Coil 170 197 - -
Eupl12g00526 1218 Coils Coil 205 231 - -
Eupl12g00526 1218 Coils Coil 906 940 - -
Eupl12g00526 1218 Gene3D - 578 660 - -
Eupl12g00526 1218 Gene3D - 948 1217 IPR027417 -
Eupl12g00526 1218 Gene3D - 8 232 IPR027417 -
Eupl12g00526 1218 PIRSF SMC 8 1215 IPR024704 GO:0005524|GO:0016887
Eupl12g00526 1218 Pfam SMC proteins Flexible Hinge Domain 517 632 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Eupl12g00526 1218 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 9 1218 - -
Eupl12g00526 1218 SUPERFAMILY Smc hinge domain 480 681 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Eupl12g00526 1218 Coils Coil 709 743 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00526 Eupl-Chr12 18633358 18689891 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00526 6 109 Structural Maintenance of Chromosomes family AT5G07660 36.036 1.00e-08 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00526 K06636 - nnu:104600877 1991.47