Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00525 ATGGTGAAATTTCTGAAGCCAAACAAGGCCGTGATCATATTGCAGGGTCGATACGCGGGAAGAAAAGCTGTGATCGTGAGATCGTTCGATGATGGGACTCGTGACCGTCCATACGGGCACTGCTTGGTGGCTGGGATCAACAAGTACCCGAAGAAGGTGATTCGAAAGGACTCAGCCAAGAAGACTGCGAAGAAGTCCCGTGTGAAGGCCTTCATCAGGCTCGTGAACTACAACCATATCATGCCTACTCGTTACACTCTCGACGTCGATCTCAAGGACGTCGTCAGCGTTGATGCCCTCCAATCGCGGGACAAGAAAATCGTGGCTGCTAAGGAAACCAAGGCTCGCTTCGAGGAGAGGTTCAAGACGGGAAAGAACAGGTGGTTCTTCACCAAGCTAAGTATAGACTCTGATGTAGAGTCTTACTACGCCAACACCAAGCAAGTTGGAAATCTTAGTTTTGTTCAGCATTTTGATAAGCCTACAGAATCGGTGATACATCCCGATAAACTATCTTTAATGCCGAGTTAA 531 0.4821 MVKFLKPNKAVIILQGRYAGRKAVIVRSFDDGTRDRPYGHCLVAGINKYPKKVIRKDSAKKTAKKSRVKAFIRLVNYNHIMPTRYTLDVDLKDVVSVDALQSRDKKIVAAKETKARFEERFKTGKNRWFFTKLSIDSDVESYYANTKQVGNLSFVQHFDKPTESVIHPDKLSLMPS* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00525 176 Gene3D - 1 135 IPR038655 -
Eupl12g00525 176 FunFam 60S ribosomal protein L27 1 135 - -
Eupl12g00525 176 Pfam Ribosomal L27e protein family 52 133 IPR001141 GO:0003735|GO:0005840|GO:0006412
Eupl12g00525 176 PANTHER 60S RIBOSOMAL PROTEIN L27 1 134 IPR001141 GO:0003735|GO:0005840|GO:0006412
Eupl12g00525 176 CDD KOW_RPL27 6 88 IPR041991 -
Eupl12g00525 176 SUPERFAMILY Translation proteins SH3-like domain 2 133 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00525 Eupl-Chr12 18622760 18624927 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00525 1 133 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 80.451 5.98e-79 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00525 K02901 - ming:122088298 247.669