Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00524 ATGGCAGATCCAGTTAGTTATGGGAATCCTGAGCGTGACATCGAGCAAGCACTAATTGCTTTGAAGAAGGGGACTCAGTTAATCAAGTACAGTCGGAAAGGGAAGCCTAAATTTTGCCTCTTCAGAATTTCTATTGATGAAACAACACTGATCTGGTATTCACGCAGAGAGGAAAGGAATCTGAAGTTATCATCCGTCTCACGGGTTATTCCAGGACAGAGAACAGCTGTGTTTAGAAGATATTTGCGCCCCGAAAAGGATTATCTATCATTTTCACTTCTATATAATAATGGTGAAAGGTCTCTTGATCTGATATGCAAGGACAAAGTTGAGGCAGAGGTGTGGTTTGCAGGCCTTAAGGCATTGATTTCTACGGGCCGATGTATTAGGCGTACTAAGAGTGATATTGCTGAATTCCATCATGGTGGATACTTCCCTCAAAATGGCCGTCCATTTGGTGCAACACTAGAGATTACTTCAAGTCTTCTCCATAGTGTTAACACAAAGGCATTGGTTGACTTTTGTTCCCGCGAACATCCTTCGAGTTTGACAAGCTCAGATGTGGGGTCAGACCGTGCAAATATGCAACCAAGAACAAGTACTACAGATGGGTTTCGAATTAGTGTTTCAAGTGCTCCTAGCAGTTCAAGTCAAGGTTCTGGACCAGATGACATTGAATCCTTGGGTGATGTTTATGTTTGGGGAGAGGTTTGGTGCGATGGGAGTTTAGCTGATGGATCTATAAACTCTTTTCCTTCAAAAACCGATGTTCTGCTTCCTAAGCCCTTAGAGTCAAATGTAGTTTTAGATGTTCATCAGATTGCTTGTGGTGTTAGACATGCTGCTCTTGTTACGAGGCAAGGTGAGGTTTTCACTTGGGGTGAGGAATCTGGTGGACAGCTTGGCCATGGAATTGATACAGATTTCAGCCGCCCTCAACTTGTTGAGTTTTTGGCAGTCAATAATGTGGATTATGTTGCATGTGGTGAGTATCATACATGTGCCATATCTATTGCTGGTGATCTATTTACTTGGGGGGATGGTACCCACAATGCTGGACTTCTTGGTCATGGCACTGATGTTAGCCATCGGATACCCAAGAGAGTTTGTGGTCCTTTAGAAGGACTTCAAGTTTTGTCTGTTGCATGTGGCACGTGGCATTCAGCATTGGCAACTTCTAATGGAAAATTGTTTACATTTGGTGATGGAACATTCGGTGTTCTGGGCCATGGGAATCGAGAAAGTGTTTCATACCCAAGGGAAGTTGAATCTTTGAGTGGAGTAAAGACTATTAAGGTTGCATGTGGAGTATGGCACACTGCAGCTATTGTAGAGTTTATGGGACAGACTGGTGCAAACACTTCATCTAGAAAGTTGTTCACCTGGGGTGATGGTGACAAAAACCGCTTGGGCCATGGGGACAAGGAAATGCGCCTGGTTCCCACCTGTGTCCAATCACTTATTGACTACAATTTCCATCAGCTGGCCTGTGGACATAGTATTACTGTTGCTCTCACAAAATCGGGGCATGTTTTTACCATGGGAAGTACTGCGTATGGTCAGCTGGGCAATCCATTGTCTGATGGCAAGTTACCCTGCTTAGTACAAGATAGATTGGTAGGTGAATGCATTGAAGAGATTTCCTGTGGCGCATTCCATGTTGCTGTCCTGACATCAAGAAGCGAAGTATTCACCTGGGGTAGAGGTTCCAATGGAAGATTGGGACATGGGGACACTGAAGATAGGAAAGTTCCAACTCTAGTTGAAGCACTAAAAGATAGACATGTTAAAAATATATCATGTGGCTCAAACTTCACAGCAAGTATATGCATTCATAAGTGGGTATCTGGTGCAGACCAATCACTTTGCTCTGGGTGTCGGCAAGCATTTGGTTTTACTAGAAAGAGGCACAACTGTTACAACTGTGGCCTAGTGCACTGCCATGCTTGCAGTTCCAAAAAAGCATTGAGAGCTGCATTAGCTCCAACTCCAGGCAAACCACATCGTGTATGTGATTCTTGCTATGCAAAACTTAAAGCATCTGAAGCTGGTAGTGCCTCGACTTTTAATAGGAAGAATGTCGCACCTCGGCGATCAATAGACAATAGGGAGAGGTTTGACAGGGGAGAGGTAAGGTCCTCAAAGATTCTGTTGTCTCCTACTGAACCAGTGAAATACCTTGAGGTCAAGTCAGTTAAACACAGGATGAAATCTGATTCTCTTTCCACAGTCCGAGCTTCCCAAGTTCCATCACTCTTACAGCTGAAAGATATTGCTTTTCCAAGTTCACTGAGTGCACTTCCAGTTCCATATGCTTTAAAACCTGTTAGAACCTCAGCACCTCAGCTAGCGATGACCCTGAAACCAGCTTCACCATACTCGAGAAAGCCAAGCCCTCCACGCTCTGCAACTCCTGTATTTTCTAAGAGTATCATTGATAGCCTCAAGAAAACAAATGAACTTTTGAATCAAGAAGTCTTGAAGTTGCAAAGCCAGGCTAAAAGTTTGAGACAGAAGTGTGAACTTCAAGATGTGGAGGTGCAGAAATCACAAAAAAGAGCTCAAGAAGCTGCTTCTTTGGCTGCAGAGAAAACTTCCAAGAGTACAGTAGTGAAGGAAGTAATCAAGTCCATCGCAGCCCAGCTGAAGAACATGACGGAGAACTTACCACCAGAGGTGTATGACAGTGAAAACTTCAAATCCATGCATATTCAAGTAGAAGCTTTGCTGAAAACAAATGAAAGCCATGCATCAGCAGTTTCTTCTTCCTTGCCACCAGACTGTTCAGAGCCTGACCAACAAAATATGCTTGATAAACCAATCTTGGCCAATGAATCCTCTGCTAACATACAAGAAGATCAAAGGATGGATGATACTGGTGATAGTGCAGGAGTTACAGACCTATCACAGAATGCTGAAGCCAATACACCATCTGTTTCTGATACTAGGGAAGCTGTCCAAAGCATTGAGAATGGTTCAAGATCACCTAGAATTTCAACAATGAGACATGAAGGAGAAAGTCAAGTGATTGAGCACTTTGAACCTGGTGTGTATGTAACTCTCATTCAACTTCCGAATGGCACCAAAGTCTTCAAACGAGTTAGATTCAGCAAAAGAAGGTTTGCCGAGCAGCAAGCAGAAGTCTGGTGGAAGGAAAATAGTAGTAGAGTGCTTCAGAAGTACAACCACCAGGGGACACACAGTACTTCAACAAGATCATCCGTCAGTGCAGCACCTGCTGAGGAAGAAGATGCATCACCATCTTCCCAAACTTAG 3276 0.4365 MADPVSYGNPERDIEQALIALKKGTQLIKYSRKGKPKFCLFRISIDETTLIWYSRREERNLKLSSVSRVIPGQRTAVFRRYLRPEKDYLSFSLLYNNGERSLDLICKDKVEAEVWFAGLKALISTGRCIRRTKSDIAEFHHGGYFPQNGRPFGATLEITSSLLHSVNTKALVDFCSREHPSSLTSSDVGSDRANMQPRTSTTDGFRISVSSAPSSSSQGSGPDDIESLGDVYVWGEVWCDGSLADGSINSFPSKTDVLLPKPLESNVVLDVHQIACGVRHAALVTRQGEVFTWGEESGGQLGHGIDTDFSRPQLVEFLAVNNVDYVACGEYHTCAISIAGDLFTWGDGTHNAGLLGHGTDVSHRIPKRVCGPLEGLQVLSVACGTWHSALATSNGKLFTFGDGTFGVLGHGNRESVSYPREVESLSGVKTIKVACGVWHTAAIVEFMGQTGANTSSRKLFTWGDGDKNRLGHGDKEMRLVPTCVQSLIDYNFHQLACGHSITVALTKSGHVFTMGSTAYGQLGNPLSDGKLPCLVQDRLVGECIEEISCGAFHVAVLTSRSEVFTWGRGSNGRLGHGDTEDRKVPTLVEALKDRHVKNISCGSNFTASICIHKWVSGADQSLCSGCRQAFGFTRKRHNCYNCGLVHCHACSSKKALRAALAPTPGKPHRVCDSCYAKLKASEAGSASTFNRKNVAPRRSIDNRERFDRGEVRSSKILLSPTEPVKYLEVKSVKHRMKSDSLSTVRASQVPSLLQLKDIAFPSSLSALPVPYALKPVRTSAPQLAMTLKPASPYSRKPSPPRSATPVFSKSIIDSLKKTNELLNQEVLKLQSQAKSLRQKCELQDVEVQKSQKRAQEAASLAAEKTSKSTVVKEVIKSIAAQLKNMTENLPPEVYDSENFKSMHIQVEALLKTNESHASAVSSSLPPDCSEPDQQNMLDKPILANESSANIQEDQRMDDTGDSAGVTDLSQNAEANTPSVSDTREAVQSIENGSRSPRISTMRHEGESQVIEHFEPGVYVTLIQLPNGTKVFKRVRFSKRRFAEQQAEVWWKENSSRVLQKYNHQGTHSTSTRSSVSAAPAEEEDASPSSQT* 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00524 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 395 446 IPR000408 -
Eupl12g00524 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 459 505 IPR000408 -
Eupl12g00524 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 340 390 IPR000408 -
Eupl12g00524 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 394 443 IPR000408 -
Eupl12g00524 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 288 336 IPR000408 -
Eupl12g00524 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 508 557 IPR000408 -
Eupl12g00524 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 562 608 IPR000408 -
Eupl12g00524 1091 Pfam Transcription factor regulating root and shoot growth via Pin3 1007 1061 IPR013591 -
Eupl12g00524 1091 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 433 443 IPR000408 -
Eupl12g00524 1091 ProSiteProfiles BRX domain profile. 1007 1062 IPR013591 -
Eupl12g00524 1091 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 617 679 IPR017455 -
Eupl12g00524 1091 PRINTS Chromosome condensation regulator RCC1 signature 290 306 IPR000408 -
Eupl12g00524 1091 PRINTS Chromosome condensation regulator RCC1 signature 498 516 IPR000408 -
Eupl12g00524 1091 PRINTS Chromosome condensation regulator RCC1 signature 556 577 IPR000408 -
Eupl12g00524 1091 PRINTS Chromosome condensation regulator RCC1 signature 397 411 IPR000408 -
Eupl12g00524 1091 PRINTS Chromosome condensation regulator RCC1 signature 381 397 IPR000408 -
Eupl12g00524 1091 PRINTS Chromosome condensation regulator RCC1 signature 340 356 IPR000408 -
Eupl12g00524 1091 Pfam FYVE zinc finger 613 679 IPR000306 GO:0046872
Eupl12g00524 1091 SUPERFAMILY RCC1/BLIP-II 229 614 IPR009091 -
Eupl12g00524 1091 SUPERFAMILY FYVE/PHD zinc finger 613 680 IPR011011 -
Eupl12g00524 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 229 287 IPR000408 -
Eupl12g00524 1091 Pfam Pleckstrin homology domain 16 123 IPR001849 -
Eupl12g00524 1091 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 274 284 IPR000408 -
Eupl12g00524 1091 MobiDBLite consensus disorder prediction 1061 1091 - -
Eupl12g00524 1091 Gene3D - 13 131 IPR011993 -
Eupl12g00524 1091 MobiDBLite consensus disorder prediction 181 224 - -
Eupl12g00524 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 509 560 IPR000408 -
Eupl12g00524 1091 Coils Coil 812 839 - -
Eupl12g00524 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 611 690 IPR013083 -
Eupl12g00524 1091 CDD PH_PLC_plant-like 12 124 - -
Eupl12g00524 1091 SUPERFAMILY PH domain-like 13 123 - -
Eupl12g00524 1091 CDD FYVE_like_SF 623 675 - -
Eupl12g00524 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 340 394 IPR000408 -
Eupl12g00524 1091 Pfam Transcription factor BRX N-terminal domain 863 899 IPR027988 -
Eupl12g00524 1091 Gene3D - 351 610 IPR009091 -
Eupl12g00524 1091 Gene3D - 189 350 IPR009091 -
Eupl12g00524 1091 MobiDBLite consensus disorder prediction 787 806 - -
Eupl12g00524 1091 MobiDBLite consensus disorder prediction 949 1003 - -
Eupl12g00524 1091 FunFam PH, RCC1 and FYVE domains-containing protein 1 200 447 - -
Eupl12g00524 1091 SMART fyve_4 611 680 IPR000306 GO:0046872
Eupl12g00524 1091 FunFam PH, RCC1 and FYVE domains-containing protein 1 448 618 - -
Eupl12g00524 1091 MobiDBLite consensus disorder prediction 963 996 - -
Eupl12g00524 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 561 612 IPR000408 -
Eupl12g00524 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 288 339 IPR000408 -
Eupl12g00524 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 457 508 IPR000408 -
Eupl12g00524 1091 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 888 - -
Eupl12g00524 1091 MobiDBLite consensus disorder prediction 181 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00524 Eupl-Chr12 18568433 18618167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00524 1004 1064 Major Intrinsic Protein MIP AT1G31880 39.344 9.26e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00524 - - msin:131245884 1582.77