Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00521 ATGGGGCAACAACAATCGAAAAACGAGCTTCTCTATCAGCAGGTCAATTACGGAAACATCGAAGGGATCAAAGCTCTTCGCCAAGAAGGCGCAAGCCTTGAGTGGACTGACAGAGAAGGAAAGACTCCCTTGATTGTGGCATGCATGAATCCTGAACTTTTGAATGTAGCCAAAACTTTGATTGAGCTCGGCGCTAATGTGAATGCTTATCGCCCGGGAATAAAGAAAGAAAGAAGAAGAAGAAGAGGAGGAAGGGGAGGGAGAGAGAGAAGTCATGCGGGGACTCCTTTACATCATGCGGCGAAAAGAGGCCTTGATCAGACTGTTAAGTTACTTCTCTCCCATGGAGCAAATGCTTTAGCGATGAATGATGATTGTCAGACTCCAATTGATGTTGCTAGAGTAAAGGGGTATTGCAATGTTGTCCGTGCAATTGAGAGTCATATCTGCCTCTTCTCTGGTTGGCTACGCGAGCTTTATGGGCCAGGCTTTCTTGAAGTATTAGCTCCTCAATGGTTATCAAGAAAAATTTGGGTTGTGGTAATACCCTGTGGTTCCCGCAATCCTACGAAGCCTCTCAAATTGGAGCTTGCCATATATCCTAGTCCACAGGATGTGCAGCCTCGTACAGTTATTGAACTATGGAAGGCCAAAATTGAGGAACCAAAGTTTCACCAGCCAGATCCTACACTGATTATTTTTGACAAGTCCACCAAAACACGATTTAAGCTTGCAGCTGCAAATGAGGGTGACAAGCAGCAGCTTCAGTGGTTTATTAATGCATGCAGAGGAATTCCCCAGGTAATGCATCCCCCATTGCCACCTAATACCCATGCTCCAGCGACTGCACCGTCCTCTACTGCAGAAGATGTAGAATTAGCCATGGCAATAAATGCCTCCATTCAGTCTGCCATGGAGGAGAGACCACCGCTTCTTCCCAATACCCACCTGAGTTCTGGAGTAAGCAACACAAATGGTTGGGGAGACTGCGCAGATAACCCCCATCACAATGGTTGGGGGCCAATGGGAGGACCTGCACCTCCTTCAAAAGCGAGTAGTAGTGGATGTCTTGATGAGCCAGCTAAAGATGCATATAACGGATGGGGTGTGTCTGAAGCTGGGTCAAGTAGCAATTCATCTCAGCATAACATTCAGGCTGTTGTCCCAATGACCCAAGAGATTCCTGAAACAACTTCAATTCCTTCAGCTCCACCAATTCCTGAGGATTCATACGATGGCCCAATTCATTATCCGTCAATTGATTCCAGCCCTGTCGATGTATCCATGCCGATACTGGAGAATGGACCAGCAAGCACAAGTGAAGTGAAAGGAGATGGAAATGATTCTTCTTCATGTGTGATATGTTTGGATGCTCCGGTCGAGGGAGCCTGCATCCCATGTGGTCACATGGCTGGATGCATGTCTTGTTTGAACGAAATCAAAGCCAAGGGGTGGGGTTGCCCCGTTTGCCGTACCAAGATAGACCAAGTTGTAAGGCTCTATGCTGTTTGA 1512 0.4702 MGQQQSKNELLYQQVNYGNIEGIKALRQEGASLEWTDREGKTPLIVACMNPELLNVAKTLIELGANVNAYRPGIKKERRRRRGGRGGRERSHAGTPLHHAAKRGLDQTVKLLLSHGANALAMNDDCQTPIDVARVKGYCNVVRAIESHICLFSGWLRELYGPGFLEVLAPQWLSRKIWVVVIPCGSRNPTKPLKLELAIYPSPQDVQPRTVIELWKAKIEEPKFHQPDPTLIIFDKSTKTRFKLAAANEGDKQQLQWFINACRGIPQVMHPPLPPNTHAPATAPSSTAEDVELAMAINASIQSAMEERPPLLPNTHLSSGVSNTNGWGDCADNPHHNGWGPMGGPAPPSKASSSGCLDEPAKDAYNGWGVSEAGSSSNSSQHNIQAVVPMTQEIPETTSIPSAPPIPEDSYDGPIHYPSIDSSPVDVSMPILENGPASTSEVKGDGNDSSSCVICLDAPVEGACIPCGHMAGCMSCLNEIKAKGWGCPVCRTKIDQVVRLYAV* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00521 503 Pfam Zinc finger, C3HC4 type (RING finger) 450 497 - -
Eupl12g00521 503 Gene3D - 2 144 IPR036770 -
Eupl12g00521 503 ProSiteProfiles Zinc finger RING-type profile. 452 491 IPR001841 -
Eupl12g00521 503 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Eupl12g00521 503 Pfam Ankyrin repeat 40 69 IPR002110 GO:0005515
Eupl12g00521 503 Pfam Ankyrin repeat 95 121 IPR002110 GO:0005515
Eupl12g00521 503 PANTHER ROLLING PEBBLES, ISOFORM B 439 501 - -
Eupl12g00521 503 CDD RING-HC_XBAT35-like 448 501 - -
Eupl12g00521 503 SMART ring_2 452 490 IPR001841 -
Eupl12g00521 503 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 434 502 IPR013083 -
Eupl12g00521 503 ProSiteProfiles Ankyrin repeat profile. 92 124 IPR002110 GO:0005515
Eupl12g00521 503 SMART ANK_2a 6 35 IPR002110 GO:0005515
Eupl12g00521 503 SMART ANK_2a 39 69 IPR002110 GO:0005515
Eupl12g00521 503 SMART ANK_2a 92 121 IPR002110 GO:0005515
Eupl12g00521 503 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Eupl12g00521 503 MobiDBLite consensus disorder prediction 74 99 - -
Eupl12g00521 503 SUPERFAMILY RING/U-box 446 497 - -
Eupl12g00521 503 SUPERFAMILY Ankyrin repeat 7 150 IPR036770 -
Eupl12g00521 503 ProSiteProfiles Ankyrin repeat region circular profile. 92 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00521 Eupl-Chr12 18505694 18524641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00521 435 500 C3H Transcription Factor Family AT3G06140 31.818 7.70e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00521 - - ming:122091597 687.182