Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00520 ATGAGGATTATGATAAAGGGCGGTGTTTGGAAGAATACTGAAGATGAGATTCTTAAAGCGGCGGTTATGAAATATGGGAAGAATCAGTGGGCTCGGATTTCTTCGCTGCTCGTCCGAAAATCTGCGAAGCAGTGCAAGGCGAGGTGGTACGAGTGGCTCGATCCGTCCATCAAAAAGACTGAGTGGACCAGAGAAGAAGATGAGAAACTGCTTCATCTTGCTAAACTCATGCCCACGCAATGGAGAACTATTGCCCCCATTGTGGGACGTACTCCTTCCCAATGTCTTGAGCGTTATGAGAAACTTCTTGATGCCGCCTGTGTCAAGGATGAGAACTATGAACCCAGTGATGACCCACGGAAATTGCGTCCTGGAGAGATCGACCCAAACCCTGAATCCAAGCCTGCACGTCCAGATCCTGTTGATATGGATGAGGATGAAAAGGAAATGCTCTCAGAAGCACGGGCTCGATTAGCCAACACCAGGGGCAAGAAAGCGAAGAGGAAAGCTAGGGAGAAACAGCTTGAAGAGGCCAGGAGGCTTGCTTCTTTGCAGAAACGGAGAGAATTAAAAGCAGCTGGAATTGAGTCTAGGCAACGAAAACGGAAAAGGAGGGGGATAGACTATAACGCTGAGATCCCCTTTGAGAAGAAGCCTCCCCGAGGGTTTTTTGATGTTACCGATGAGGAGAGACCTATTGAACAACCTAAGTTTCCGACCACCATTGAAGAGCTTGAAGGGAAAAGGAGGGTTGATGCGGAAGCACAATTAAGAAAGCAGGATATTGCTAAGAACAAAATAGCACAGAGGCAGGATGCCCCATCATCTATATTACAAGTCAACAGACTGAATGATCCAGAAACAGTTAGGAAGAGATCGAAACTGATGCTTCCTGCACCACAGATTTCGGACCATGAATTGGAGGAAATTGCAAAGATGGGTTATGCTAGCGATCTTGTTTCCGGGAATGAGGAACTTTCTGAAGGAAGTGGTGCCACACGTGCTCTTCTTGCTAATCATGCTCAGACCCCACGAATGGGGATGACACCATTACGAACCGCACAAAGGACACCTGGTGGGAAAGCGGATGCTATTATGATGGAAGCGGAAAACCTTGCAAGGTTAAGAGAGTCACAAACCCCATTACTGGGTGGGGAGAATCCAGAGTTGCACCCATCAGATTTTTCAGGTGTTACTCCTAAGAAAAGGGAGGTCCAAACACCAAACCCCATGGCTACTCCTTTGTCTACTCCTGGACCCATGGGTCTTACTCCTAGAATTGGCATGACACCATCAAGGGATGGGTATTCTTTTGGTGTGACCCCAAAAGGAACTCCCATCCGAGATGAGCTTCACATAAATGAAGATATGGATATGCATGATAGTGCAAAACTTGAGCTCCGTAGGCAGGCTGAGTTGAGAAGAAACTTGCGTTCTGGTTTAACCAATCTTCCACAGCCTAAGAATGAGTATCAGATAGTTATCCAGCCGGTTGCAGAGGAAAATGAAGAACCTGAGGACAAGATTGAAGAAGATATGTCAGATAGGATAGCTAGAGAAAAGGCTGAGGAAGAAGCAAGGCAGCAGGCACTACTTAGGAAGAGATCAAAAGTACTGCAGAGGGAGCTCCCTAGACCTCCTGCTGCTTCATTGGAACTTATTAGGAATTCGTTGATGAGAGGTGATGAAGACAAGAGTTCTTTTGTACCTCCCACTTTGATCGAGCAGGCTGATGAAATGATCAGAAAGGAGCTCTTAACTTTATTGGAACATGATAATGCTAAGTATCCACTTGATGAAAAAGTAGACAAGGAAAAAAAGAAAGGGGGCAAGTGCCCTTTAAATGGAAAAGCTGCTGTGTCCATCCCTGAGATAGAAGATTTTGAAGAAGATGAATTGAAAAAGGCTGATTCATTTATAGAGGAAGAGGTTCAGTTTCTCTGTGTGGCAATGGGACATGAGAATGAATCCCTTGACGAATTTGTTGAAGCACATAATGCATGCCAAAAAGATCTCATGTACTTTCCCACTCGTAATGCTTATGGTCTCTCTAGTGTTGCCGGAAACATGGAGAAACTTGCGGCCTTGCATAATGAATTTGAGGATGTGAAAAAGAGAATGGATGATGAAGCTAAGAAGGCACAACGCCTTGAGCAGAAGATAAAACTTCTCACGCATGGTTACCAGATCCGGGCTGGAAAACTTTGGTCACAAATAGAGGCCACCTTCAAGCAGATGGACACTGCTGCAACGGAACTTGAGTGCTTCCAAGCTTTACAAAAGCAAGAGCAGTTGGCAGCAACATACAGGATCAATGGTTTGTTGGAGGAAATCAAGAAGCAGCAGGAGCTAGAGAAAAATCTACAGCTACGCTTTGGGAGCCTCATAACGGAGCTGGATAGGATTCAAACTCTTTTGGAAGAGTGCAGATTACAATCAAAAATTCAGGAAGAAATTGCAGCTAAGGATCATGCTCTTGAGTTGTCACAGTCTGCTACAAATCAAACTGATATGCTGAGTGAAGGGTCTGCTTTACCTGTAACCTCAGAGGAGCTTCATATTGCTATACCGATCAACCACACACATGATGAGGGTCCGGTCGGGCAAGTGGCTGATGCCCAAGAGCAACCTACTCCTGCCAGGCCAATGGATATTGATGTTGATGGGGATCAGGACTCTGTTAAAATCGTGGCTGTAGAAGAGAAGGCAGTGGTAGTACAAGGCAATAGCTATGAAGGCCATATTCCAAGTGATACTCAGCTCATGGTTGCTGAGTCCGAAGACCCAAGTGGTGTTTTGGTTCAAAATCTTGCTGTTCCTGTTCAAGGTGCTGTTGACAATGGTGATTCTGTTCCCAGTAAAACTGGATTTGAGAATAAGATGATGATCGATTCAGGCGTTGACCAGATAGCAGGTGATTCAGGGGACAGTTTTGAATTTGCGAGGGAAGAAATGAGCACGGTGTCCCAAAATAGTCATCTAGACTCCGAGACACCAGTTGACGATCAGCACACTGTAATGGAAGTTGGGAATCCAGAAGCTATTTCAATAAAACCAGAAATGAACACGGAGTCCCACAATAGTCATCTAGACCCCGAGATACCAGTTGACGATCAGCACACTGTAATGCAAGTCGGGAACCCAGATGCCATTTCATCAAAACCAGAAGTCAGTGTTCAACATATGGCTGATGACGGTTATGGCGGTGATGCCGTGCTGGTTCCCAGTTCTGAGGAGAAGACGCTGGTTAATTTGGATGGAAATACGTTCAGCAAAACAACAGAGTCAGTTAGTGGTGCAGATGCTGTTTCAGATGCCAAGGAGACTCTATCTGCTGTGAGTGGAGATTTGATTGAGAAGTCTGGTGAGTAG 3372 0.4552 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPSDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIESRQRKRKRRGIDYNAEIPFEKKPPRGFFDVTDEERPIEQPKFPTTIEELEGKRRVDAEAQLRKQDIAKNKIAQRQDAPSSILQVNRLNDPETVRKRSKLMLPAPQISDHELEEIAKMGYASDLVSGNEELSEGSGATRALLANHAQTPRMGMTPLRTAQRTPGGKADAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKREVQTPNPMATPLSTPGPMGLTPRIGMTPSRDGYSFGVTPKGTPIRDELHINEDMDMHDSAKLELRRQAELRRNLRSGLTNLPQPKNEYQIVIQPVAEENEEPEDKIEEDMSDRIAREKAEEEARQQALLRKRSKVLQRELPRPPAASLELIRNSLMRGDEDKSSFVPPTLIEQADEMIRKELLTLLEHDNAKYPLDEKVDKEKKKGGKCPLNGKAAVSIPEIEDFEEDELKKADSFIEEEVQFLCVAMGHENESLDEFVEAHNACQKDLMYFPTRNAYGLSSVAGNMEKLAALHNEFEDVKKRMDDEAKKAQRLEQKIKLLTHGYQIRAGKLWSQIEATFKQMDTAATELECFQALQKQEQLAATYRINGLLEEIKKQQELEKNLQLRFGSLITELDRIQTLLEECRLQSKIQEEIAAKDHALELSQSATNQTDMLSEGSALPVTSEELHIAIPINHTHDEGPVGQVADAQEQPTPARPMDIDVDGDQDSVKIVAVEEKAVVVQGNSYEGHIPSDTQLMVAESEDPSGVLVQNLAVPVQGAVDNGDSVPSKTGFENKMMIDSGVDQIAGDSGDSFEFAREEMSTVSQNSHLDSETPVDDQHTVMEVGNPEAISIKPEMNTESHNSHLDPEIPVDDQHTVMQVGNPDAISSKPEVSVQHMADDGYGGDAVLVPSSEEKTLVNLDGNTFSKTTESVSGADAVSDAKETLSAVSGDLIEKSGE* 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00520 1123 MobiDBLite consensus disorder prediction 110 149 - -
Eupl12g00520 1123 CDD SANT_CDC5_II 55 106 IPR047240 -
Eupl12g00520 1123 Pfam pre-mRNA splicing factor component 407 659 IPR021786 -
Eupl12g00520 1123 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Eupl12g00520 1123 MobiDBLite consensus disorder prediction 157 176 - -
Eupl12g00520 1123 Pfam Myb-like DNA-binding domain 10 70 - -
Eupl12g00520 1123 SUPERFAMILY Homeodomain-like 33 107 IPR009057 -
Eupl12g00520 1123 Gene3D - 59 115 - -
Eupl12g00520 1123 Coils Coil 167 187 - -
Eupl12g00520 1123 SMART sant 58 105 IPR001005 -
Eupl12g00520 1123 SMART sant 6 55 IPR001005 -
Eupl12g00520 1123 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Eupl12g00520 1123 Coils Coil 771 791 - -
Eupl12g00520 1123 Coils Coil 693 720 - -
Eupl12g00520 1123 FunFam CDC5 cell division cycle 5-like 5 59 - -
Eupl12g00520 1123 CDD SANT 10 53 IPR001005 -
Eupl12g00520 1123 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Eupl12g00520 1123 FunFam CDC5 cell division cycle 5-like 60 120 - -
Eupl12g00520 1123 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Eupl12g00520 1123 MobiDBLite consensus disorder prediction 381 421 - -
Eupl12g00520 1123 Gene3D - 5 58 - -
Eupl12g00520 1123 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 805 IPR047242 GO:0000398|GO:0000974
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00520 Eupl-Chr12 18483931 18500124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00520 1 835 MYB-Related Transcription Factor Family AT1G09770 74.611 0.0 1234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl12g00520 Myb_Cef 4.5e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00520 K12860 - ming:122093231 1525.38