Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00516 ATGTCGCGTGAATCTGCCTCGAATTTCAACCCATCTTCTTCGGCACAGTTCACTTATACAAATGGTTCTTACTTTCCTCTCCCTTTCCACCTTCAACAATCGGATCAGACGTCCGTTCAGCAATACTCTAAACCCTACATGCCTCCACCTCCTACGCCGGTGCAAATCCCTCCTCCACCGGTCAAAGTTCCGACAGCCCCGATTTTCCCTCCTTCCTATGCAGCGCCACCGCCTGTCACCGGTGTGTATTCGCTGCCACAATATCAGCAGGCCCAGCAGTTGTTCCAGAGGGACGCGCAGACAATTACACCAGAAGCTCTCGAAAGTGTAAAAGCTGCACTTGCGAGCAGTGAAATCAAACACAAGGCAGAAACCAAAAAAAAAGCAATACCTCGTAAAGTTGCTGGGCAGAGTTGGGAGGATCCAACACTTGCAGAGTGGCCAGAAAATGATTATCGCTTATTTTGCGGGGATCTTGGTAACGAAGTGAATGATGAGGTTCTTTCTAAAGCATTTTCAAGATTTCCTTGCTTTAACATGGCGAGAGTCGTGAGAGATAAGAGGACCGGCAAAACCCGAGGTTATGGATTCGTTAGTTTTGCCAACCCTGCAGACCTTGCAGCAGCCCTGAAAGAAATGAATGGTAAATATGTTGGAAACCGTCCAATCAAACTGCGTAAGAGCACCTGGAAGGAGAGAACAGATTTTGAGGCCTTGGAAAGGCAAAAGAACCAAACTCAAAAGAAACCAAAGCTGTCGAAGAAGAAGCATTATCCGCAAGTGAATATGCAGAAATGA 798 0.4699 MSRESASNFNPSSSAQFTYTNGSYFPLPFHLQQSDQTSVQQYSKPYMPPPPTPVQIPPPPVKVPTAPIFPPSYAAPPPVTGVYSLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIKHKAETKKKAIPRKVAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDEVLSKAFSRFPCFNMARVVRDKRTGKTRGYGFVSFANPADLAAALKEMNGKYVGNRPIKLRKSTWKERTDFEALERQKNQTQKKPKLSKKKHYPQVNMQK* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00516 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 152 230 IPR000504 GO:0003723
Eupl12g00516 265 CDD RRM_RBM42 146 228 IPR034215 -
Eupl12g00516 265 FunFam RNA-binding protein 42 87 237 - -
Eupl12g00516 265 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 75 247 - -
Eupl12g00516 265 MobiDBLite consensus disorder prediction 28 43 - -
Eupl12g00516 265 SUPERFAMILY RNA-binding domain, RBD 133 232 IPR035979 GO:0003676
Eupl12g00516 265 SMART rrm1_1 153 226 IPR000504 GO:0003723
Eupl12g00516 265 MobiDBLite consensus disorder prediction 28 49 - -
Eupl12g00516 265 MobiDBLite consensus disorder prediction 236 265 - -
Eupl12g00516 265 Gene3D - 87 227 IPR012677 -
Eupl12g00516 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 154 224 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00516 Eupl-Chr12 18409004 18430344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00516 154 254 Eukaryotic Initiation Factors Gene Family AT1G71770 26.733 2.51e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00516 K25079 - nnu:104602865 372.089