Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00500 ATGCCTTTCAAGCGATATGTGGAGATCGGGAGAGTTGCTCTCGTGAATTACGGGAAAGATTATGGGCAACTCGTCGTGATCGTCGACGTTATCGATCAAAATCGGGCTCTTGTTGATGCCCCTGATATGGTGAGAAGCCAAATGAACTTCAAGAGGCTCTCACTGACGGATATCAAGATTGACATCAAAAGGATCCCGAAAAAGAAGTCTCTGATTGAGGCCATGGAGGCTGCAGATGTCAAGAACAAATGGGATAACAGCTCCTGGGGCAGGAAGCTGATTGTGCAGAAAAGAAGGGCTTCTCTGAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGAGAGGTGGAGCAATCAGGCAAGAGCTTGCAAAGCTGAAGAAGCAGAATGCATCTTGA 405 0.4617 MPFKRYVEIGRVALVNYGKDYGQLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKIDIKRIPKKKSLIEAMEAADVKNKWDNSSWGRKLIVQKRRASLNDFDRFKIMLAKIKRGGAIRQELAKLKKQNAS* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00500 134 PANTHER 60S RIBOSOMAL PROTEIN L14 1 131 IPR039660 GO:0003723|GO:0003735
Eupl12g00500 134 Pfam Ribosomal protein L14 45 117 IPR002784 GO:0003735|GO:0005840|GO:0006412
Eupl12g00500 134 SUPERFAMILY Translation proteins SH3-like domain 5 93 IPR008991 -
Eupl12g00500 134 FunFam 60S ribosomal protein L14-1 1 84 - -
Eupl12g00500 134 Gene3D - 1 84 IPR014722 -
Eupl12g00500 134 Gene3D - 92 127 - -
Eupl12g00500 134 CDD KOW_RPL14 7 79 IPR041985 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00500 Eupl-Chr12 18099956 18104345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00500 1 131 Cytoplasmic Ribosomal Protein Gene Family AT4G27090 84.733 1.81e-78 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00500 K02875 - vvi:100264927 240.736