Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00495 ATGTCGAAGCTAAATTCTGCGACCAGAAGGACGTTTCAGCAAACCTTCCTTCAGGAACTATTTTTAAGAGGGAATCGCGTCAAGAAAGAAAAAAAATTAGTTGATTATAAAATGCAAATACGTATAAAGGTATCAAGGATTGGAAAGACATTTAAACTTGATGTGAATAGCTGGGACAGCATTCATATTGTCAAGGCCAAGATTCATGACAAGGAGGGAATACCAACCAACCAGAATGACCTAATCTACAATGGAAGACAACTCGAGGATAGCCGAACTCTGGCAGATTATTACATTCAGAGCGGGTCGACCCTCTATGCAATCTTTTATGAGAGAGAGAGAGAGAGAATGCAAATATTTGTTAAAATGATAACAGGAGAAACCATCAAACTTGAAGTAAAAATATGGTATACCATTGAGAATGTAAAGAACATAATTGAGAGCACGGTAGGGGTCTCAACAGACCAGCAGAGGCTCATCTTTGCTGGGAAGCAGCTGTGGGATTGTTGGACAATGGAAGGATGCAATATCCAGAATGAATCAACATTATGTCTGGTCCCTCCATTTGGTGGCATGATATCAGTGAGTTAA 591 0.3959 MSKLNSATRRTFQQTFLQELFLRGNRVKKEKKLVDYKMQIRIKVSRIGKTFKLDVNSWDSIHIVKAKIHDKEGIPTNQNDLIYNGRQLEDSRTLADYYIQSGSTLYAIFYERERERMQIFVKMITGETIKLEVKIWYTIENVKNIIESTVGVSTDQQRLIFAGKQLWDCWTMEGCNIQNESTLCLVPPFGGMISVS* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00495 196 ProSiteProfiles Ubiquitin domain profile. 117 186 IPR000626 GO:0005515
Eupl12g00495 196 ProSiteProfiles Ubiquitin domain profile. 38 114 IPR000626 GO:0005515
Eupl12g00495 196 SUPERFAMILY Ubiquitin-like 115 187 IPR029071 -
Eupl12g00495 196 PANTHER UBIQUITIN 117 186 - -
Eupl12g00495 196 Gene3D - 36 109 - -
Eupl12g00495 196 Gene3D - 110 195 - -
Eupl12g00495 196 Pfam Ubiquitin family 119 186 IPR000626 GO:0005515
Eupl12g00495 196 Pfam Ubiquitin family 41 107 IPR000626 GO:0005515
Eupl12g00495 196 SMART ubq_7 40 110 IPR000626 GO:0005515
Eupl12g00495 196 SMART ubq_7 117 188 IPR000626 GO:0005515
Eupl12g00495 196 PRINTS Ubiquitin signature 49 69 IPR019956 -
Eupl12g00495 196 PRINTS Ubiquitin signature 91 112 IPR019956 -
Eupl12g00495 196 PRINTS Ubiquitin signature 70 90 IPR019956 -
Eupl12g00495 196 SUPERFAMILY Ubiquitin-like 28 109 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00495 Eupl-Chr12 18029985 18030575 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00495 117 196 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 58.025 1.53e-20 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00495 K08770 - nnu:104610361 155.992