Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00494 ATGGGAGGAAGCACAGTAGTCTCTGACGACGAAGCTGAGGTCTTCGAAGAGGAGAGAGAAGCTCGTGATGCAGGTGCAGTAGATGTCACAAGGAGGGACGCGGACGAATACGACGAAGAGGAAGATGAAATGGGGCAGAATGAATACGTGAAGGATGGATTTATAGAGGACGATGCAGAGGAAGAGGAAGAAGAGCAGGATGAGGAGGAAGAGGAAGAAGAGCAGGATGAGGAGGAAGAGGAAGAAGAGCATGATGGGGAGGAAGAGAGGGTTAGTAGTGACGACGAGAGGCAAAAAAGGAAGAAGAGGAAGAAAAGGCACACACCAAAGAAACAACAAACAAAACTACGCGGTCGAGGAGAGAAGAAGGATTTGGATTTTGACCTTCTAATCTATACTTTGTTCGAGGCAGTCTTCGTAGAAATTGATCCTTTTTCTTCTTTGGAAGAAAAAGCTGTGCATACTTTGCAGTTGAAGATCTATTTGAAGGTAATGAAAACCATTGCCTTGGGAGTGAAGAGCTCTGACACAATTGAAGATGTCAAAGCTAAATTCTGCATCAAGGAGGGCGTGTCAGCAAACCTCCAGGAACTATTTTTCAGTGGGAATCACCTTAAGAATGACAAAAAATTGGTTGATTATGACATACAGAATGGCTCCACTGTCCATATGTTTCTCCATTCAGGAGCTGGAATGCAAATACATGTGAAGGCATCAAGGATTGGAAAGACAATTACACTTGATGTGAATAGATGGGACACCATTCATAATGTCAAGGCCAAGATTCAGGAGGAGGAGGGAATACCAACGAACCAGAATGACCTCATCTACAATGGAAAACAACTCGAGGATAGCCGAACTCTGGCAGCTTATAACATTCAGAGCGGATCGACCCTCAATGCAGTCTTTTGTGAGGGAGAAAGAATGCAAATATTTGTTAAAATGGTAACAGGAGAAAGCATCAAAATAGAAGTAAAACTATGGTATACTGTTGAGAATGTCAAGAACATAATTGAGAGCATGGTGGGGGAATCAACAGACCGCCAGAGGCTCACCTTTGCTGGGAAGCAGCTGGAGGATGATTGGACAATGGCAGGATGCAATATCAACAAGGAATCAACATTGTGTCTGCTGGGACCTCCATTTGGTGGGATGCTGATAGTTGTGAAGTCATGTACGGGTAAGACGATAACACTTGAGGTGGAGAGCTATGACACTATCAGTAATGTGAAGAAGAAGATTCATGATAAGGAGGGGATCCCACCAGAAGAGCAGAGGCTCGTCTATCGTGGGCACCTGATGAAGGGTTTCCTTACTATCGCAGACTACGAAATCAACACAAAGTCCAAAATTGACCTTGTACTTAGGGTTCGTGGTTAG 1380 0.442 MGGSTVVSDDEAEVFEEEREARDAGAVDVTRRDADEYDEEEDEMGQNEYVKDGFIEDDAEEEEEEQDEEEEEEEQDEEEEEEEHDGEEERVSSDDERQKRKKRKKRHTPKKQQTKLRGRGEKKDLDFDLLIYTLFEAVFVEIDPFSSLEEKAVHTLQLKIYLKVMKTIALGVKSSDTIEDVKAKFCIKEGVSANLQELFFSGNHLKNDKKLVDYDIQNGSTVHMFLHSGAGMQIHVKASRIGKTITLDVNRWDTIHNVKAKIQEEEGIPTNQNDLIYNGKQLEDSRTLAAYNIQSGSTLNAVFCEGERMQIFVKMVTGESIKIEVKLWYTVENVKNIIESMVGESTDRQRLTFAGKQLEDDWTMAGCNINKESTLCLLGPPFGGMLIVVKSCTGKTITLEVESYDTISNVKKKIHDKEGIPPEEQRLVYRGHLMKGFLTIADYEINTKSKIDLVLRVRG* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00494 459 Gene3D - 155 227 - -
Eupl12g00494 459 Gene3D - 384 459 - -
Eupl12g00494 459 Gene3D - 228 306 - -
Eupl12g00494 459 Gene3D - 307 383 - -
Eupl12g00494 459 SUPERFAMILY Ubiquitin-like 154 227 IPR029071 -
Eupl12g00494 459 SUPERFAMILY Ubiquitin-like 231 302 IPR029071 -
Eupl12g00494 459 FunFam Polyubiquitin-C 385 418 - -
Eupl12g00494 459 PRINTS Ubiquitin signature 395 415 IPR019956 -
Eupl12g00494 459 PRINTS Ubiquitin signature 437 458 IPR019956 -
Eupl12g00494 459 PRINTS Ubiquitin signature 416 436 IPR019956 -
Eupl12g00494 459 FunFam Polyubiquitin 9 230 306 - -
Eupl12g00494 459 ProSiteProfiles Ubiquitin domain profile. 385 459 IPR000626 GO:0005515
Eupl12g00494 459 ProSiteProfiles Ubiquitin domain profile. 309 384 IPR000626 GO:0005515
Eupl12g00494 459 PANTHER UBIQUITIN 232 303 - -
Eupl12g00494 459 Coils Coil 55 90 - -
Eupl12g00494 459 MobiDBLite consensus disorder prediction 99 113 - -
Eupl12g00494 459 SUPERFAMILY Ubiquitin-like 301 384 IPR029071 -
Eupl12g00494 459 MobiDBLite consensus disorder prediction 1 119 - -
Eupl12g00494 459 SMART ubq_7 158 227 IPR000626 GO:0005515
Eupl12g00494 459 SMART ubq_7 232 304 IPR000626 GO:0005515
Eupl12g00494 459 SMART ubq_7 385 456 IPR000626 GO:0005515
Eupl12g00494 459 SMART ubq_7 309 380 IPR000626 GO:0005515
Eupl12g00494 459 ProSiteProfiles Ubiquitin domain profile. 158 231 IPR000626 GO:0005515
Eupl12g00494 459 SUPERFAMILY Ubiquitin-like 383 459 IPR029071 -
Eupl12g00494 459 MobiDBLite consensus disorder prediction 54 89 - -
Eupl12g00494 459 Pfam Ubiquitin family 311 378 IPR000626 GO:0005515
Eupl12g00494 459 Pfam Ubiquitin family 162 227 IPR000626 GO:0005515
Eupl12g00494 459 Pfam Ubiquitin family 234 302 IPR000626 GO:0005515
Eupl12g00494 459 Pfam Ubiquitin family 387 458 IPR000626 GO:0005515
Eupl12g00494 459 ProSiteProfiles Ubiquitin domain profile. 232 302 IPR000626 GO:0005515
Eupl12g00494 459 MobiDBLite consensus disorder prediction 18 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00494 Eupl-Chr12 18021715 18026451 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00494 385 459 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 61.333 1.40e-22 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00494 K08770 - nnu:104610361 315.464