Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00493 ATGGACGCACAGTCATCCGAAGAAGAGGTAGGGCGCACGATCTTTGCTGTTGCTGGAAGGTCTTCCTCGGACTGGTCGCTCGAAGTCGGAATCGTCAGTCGGGCAACTTCAGGTCAAGTCAGAAAGAACTCAATTAAGAAGAAAATGCTAAGATTAGATATCGTACTTGAGCGGGAGGATCCTATTTATAGGCAAGAGAACTACCCCTTTGAAATAGCAAGTGTTGCAGTTATGGTAAATATCTTTGTGAAGGTCATGAAAACAGTAGCCTTCAGGGTAAAGGCGTCTGACACAATTGAGAATGTCAAAGCTAAGTTCCAGGAGAAAGAATGCATCTCGGAAAGACTCGAGGGGCTTTTTTTCTCTGGAGATCTCCTCAAGGATGACCGAACACTGGTCGATTATGGTATTCAGAAGAACTCCACCCTTCATCTGGTTCTCCGAAGTGCAGCTGGAATGCAAATATTTGTCAAGATACCACCAAATGGAAAAAGTGTTGTGCTTGAAATGAAGCCTTGTGATACCATCCAGAGCATCAAGGCCATGATTCAGGACAAGGAGGGGATCCCACCGGACCGCTATACACTTGTCTATGCTGGAAGACTACTTGAAGATAGCAAAACTCTGGCTGCTCACAAAATCCAGAAAGATTCCACCTTACGCATGGTGTTCAATCCAAGAGACATGATGGTAATATTTGTGAACACACCGAGTGGAGAAACCTTGAAGCTGGAAGTGAAGATTTTGTACACCATCCAAGATGTCAAGGAAATAGTTGAGAGCAGAATGGGTTTCCCACCTAACCAGCGGAGTCTTGCTTATGCTGGAAAGCAGCTCGAGGATTGCCGGACTTTGGCCTATTATGATATCAAAGAAGAATCAACCTTAGATATGGTACTGCCTGTGATCCAGATATTTGTTAAGACTTGGAGAGGCAAGACCATAACGCTTGAAGTTGAGAGCTCCAATACTATCAACGATGTGATGAACAAGATTAATAACAAGCTGGGGATGCCAACCCTCGGTCAGCATCTTCATTTTGCCGGGAGACGACTTGAGGGAGACTGGGATCTGGCTAGTTACAATATCCAGAAGGAATCCACTCTCCATCAGGTTTTATCGCCTTCATTTTGTGCCAAAAGAATGGAAATATATGTCAAGAAGCAAACTGGAACTGAAAGTCCCATTTCGCTGATTGTGGGTAGCTTCACAACCATCAATAATGTGAAAGCTATGATTCGAGACAAGATGGGGCAGCTGCGCCAATTGTATGTCCTCTATGATGGAAAGATACTTGGTGATGACTATACTCTGGCAGATTACAATATTGAGCCGCACTCAACATTACAAGTTGCTTTTTCCCTGAAAAAAATAAAGGCCGAAAATGAGAAGTAA 1395 0.4387 MDAQSSEEEVGRTIFAVAGRSSSDWSLEVGIVSRATSGQVRKNSIKKKMLRLDIVLEREDPIYRQENYPFEIASVAVMVNIFVKVMKTVAFRVKASDTIENVKAKFQEKECISERLEGLFFSGDLLKDDRTLVDYGIQKNSTLHLVLRSAAGMQIFVKIPPNGKSVVLEMKPCDTIQSIKAMIQDKEGIPPDRYTLVYAGRLLEDSKTLAAHKIQKDSTLRMVFNPRDMMVIFVNTPSGETLKLEVKILYTIQDVKEIVESRMGFPPNQRSLAYAGKQLEDCRTLAYYDIKEESTLDMVLPVIQIFVKTWRGKTITLEVESSNTINDVMNKINNKLGMPTLGQHLHFAGRRLEGDWDLASYNIQKESTLHQVLSPSFCAKRMEIYVKKQTGTESPISLIVGSFTTINNVKAMIRDKMGQLRQLYVLYDGKILGDDYTLADYNIEPHSTLQVAFSLKKIKAENEK* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00493 464 SUPERFAMILY Ubiquitin-like 152 227 IPR029071 -
Eupl12g00493 464 FunFam Polyubiquitin 9 151 229 - -
Eupl12g00493 464 Pfam Ubiquitin family 232 300 IPR000626 GO:0005515
Eupl12g00493 464 Pfam Ubiquitin family 155 227 IPR000626 GO:0005515
Eupl12g00493 464 Pfam Ubiquitin family 305 375 IPR000626 GO:0005515
Eupl12g00493 464 Pfam Ubiquitin family 81 148 IPR000626 GO:0005515
Eupl12g00493 464 Pfam Ubiquitin family 384 455 IPR000626 GO:0005515
Eupl12g00493 464 ProSiteProfiles Ubiquitin domain profile. 382 451 IPR000626 GO:0005515
Eupl12g00493 464 SUPERFAMILY Ubiquitin-like 78 148 IPR029071 -
Eupl12g00493 464 Gene3D - 79 150 - -
Eupl12g00493 464 PRINTS Ubiquitin signature 206 227 IPR019956 -
Eupl12g00493 464 PRINTS Ubiquitin signature 164 184 IPR019956 -
Eupl12g00493 464 PRINTS Ubiquitin signature 185 205 IPR019956 -
Eupl12g00493 464 Gene3D - 151 228 - -
Eupl12g00493 464 Gene3D - 379 464 - -
Eupl12g00493 464 Gene3D - 229 302 - -
Eupl12g00493 464 ProSiteProfiles Ubiquitin domain profile. 230 300 IPR000626 GO:0005515
Eupl12g00493 464 SUPERFAMILY Ubiquitin-like 377 455 IPR029071 -
Eupl12g00493 464 ProSiteProfiles Ubiquitin domain profile. 303 374 IPR000626 GO:0005515
Eupl12g00493 464 FunFam Polyubiquitin-C 303 335 - -
Eupl12g00493 464 Gene3D - 303 378 - -
Eupl12g00493 464 SMART ubq_7 230 301 IPR000626 GO:0005515
Eupl12g00493 464 SMART ubq_7 303 374 IPR000626 GO:0005515
Eupl12g00493 464 SMART ubq_7 382 454 IPR000626 GO:0005515
Eupl12g00493 464 SMART ubq_7 153 225 IPR000626 GO:0005515
Eupl12g00493 464 SMART ubq_7 79 148 IPR000626 GO:0005515
Eupl12g00493 464 SUPERFAMILY Ubiquitin-like 302 374 IPR029071 -
Eupl12g00493 464 ProSiteProfiles Ubiquitin domain profile. 79 152 IPR000626 GO:0005515
Eupl12g00493 464 ProSiteProfiles Ubiquitin domain profile. 153 229 IPR000626 GO:0005515
Eupl12g00493 464 PANTHER UBIQUITIN 304 389 - -
Eupl12g00493 464 SUPERFAMILY Ubiquitin-like 225 300 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00493 Eupl-Chr12 17996784 18010670 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00493 382 456 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 47.368 5.66e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00493 K08770 - ming:122090628 390.193