Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00483 ATGGGCATTAAGAAATGGACCAAAGGGCGGGGAATCAGCGTTAGACCAAGGTTGGAGAAGATAATGAAGTGCCTTTGCTCAGGAGAACAGTTAGGAGGTGACGAAATGGTTCCCTCATCCGAGTCCCTGGCGACCAGAGACTATTCGGCAAGCGGGTATTCTTCTCGAGCTGGTGAGGGTGAGCAGAGGCCTGATACTGGCAATATCGAAGAAGCCGAATCGTCTCTTCGTGAGAGTGGTTTTCTGAACTATGAGGAAGCAAGAGCATTATTAGGAAGGCTCGAGTATCAAAGAGGAAATGTAGAAGCTGCTCTTCATGTATTTGAAGGAATAGATATTGCTGCTGTGATTCCCAAGATGAAACTCTCCATGGCTAGAAGAGTCGAACGGCGCAAGCGCCGTTCTCAGAGTGATGCTGCTCCACTAATGTCTATACATGCCATTAGTTTACTCTTCGAAGCGATCTTTCTCAAAGCAAAATCGTTGCAGGACCTTGGGAGGTATAGAGAAGCTGCTCAATCATGCAAAGTTATTCTGGACACTGTTGAATCTGCATTACCAGAAGGGTTGCCTGAAAACTTTGGTGCTGATTGTAAATTGCTGGAGACTCTAAATAAGGCTGTTGAGTTGCTTCCAGAGTTATGGAAACTTGCTGGCTTTCCCCACGAAGCAATCTTATCATACCGGCAAGCCCTTCTTTGTCACTGGAACCTTGACATGGAGACCACTGCAAAGATACAGAAAGAGTTTGCCATTTTTCTTCTCTATGCTGGCAGTGACGCTAGCCCCCCAAACCTTCGTTCCCAAACTGAAGGATCCTTCGTACCTAGAAACAATATAGAAGAGGCTGTTCTTCTTTTAATGATTCTGTTAAGGCAATTCTCTCTTAAAAGGATTGAGTGGGATCCATCAATCATCGATCATCTTTCCTTTGCTTTATCAGTTTCAGGGGAGCTAAGGGCCCTAGCCGGTCAGGTTGAAGAATTGCTTCCTGGGATTTTGGATAGGAAAGAAAGATATTACACTCTTGCTCTCTGTTACTATGGGGAAGGTGAGGACTTGGTCGCCTTGAATCTACTGAGGAAACTGTTGAGTAGCAGAGAGAATCCAAATTGCATACAGGCTTTATTACTGGCTTCAAAGATTTGTGGGGAGAACCCTAATTGTGCGGAGGAAGGTGTTGGTTTTGCTCGCAGAGCGCTTACCAGATTTCAGGGAGGATGTGAATCATGTGATCAGATGGGAAGTTTCACTAATTGCTTACTAGGTGTCTCACTGTCAGCTCAGGCCAGATTGGTTGTGTCTGATTCCGACAGGATTACGAGACAGTCTGAGGCACTCGAGGCACTAGAAGCTGCTGAGAGAACGATGAGAGAAAGAAATCCTACAGTTATATTCAATCTCAGCCTAGAAAATGCTGAGCAGAGGAAGTTGGATGTCGCACTATATTATGCAAATCAGTTTCTGAAACTTGAAGCTGGGTCTAATGTTAAAGGGTGGATCCTTTTGGCTCGAATATTATCATCTCAGAAACGGTTTATGGATGCCGAGGCTATCATTAATGTTGCACTGGATCAGACTGGGAAGTGGGATCAAGGAGAATTGTTGCGAACTAAAGCTAAGCTCCAGACTGCGCAGGGTCAATTAAAGAATGCAATTGAGACATATACTCATCTTCTAGCTGTTCTTCAAGTTCAGAGTAAAAGTTCCGGAGTTGGGAAAAGGCCTATAAAGGGCAGTGGCAACCATGATAGAACTTTGGAATTAGAAACATGGCACGATCTGGCTAATGTCTACACAAGCTTGTCACAGTGGCGGGATGCTGAGGTTTGTCTCTCCAAATCAAAGGCCATCACTTCTCATTCTGCTTCTAGGTGGCATGCCACAGGTTTACTCTACGAAGCAAAGGGACTCCACAAAGAAGCTCTTAAAGCATACGCAAGCGCGTTAGATGTTGAACCCACCCATGTTTCAAGTTTGGTCTCTACTGCTACTAATCTCAGACAGCTGGGCAACCAGTCATTGGCAGTTGTGAGAAGCTTTCTAACAGATGCACTGCGGCTAGACAGAACGAACGCTTCTGCTTGGTACAATCTTGGGCTGCTTTACAAAGCTGAGGGTGGTGGATCGGCACTAGAAGCCACCGAATGTTTTGAGGCTGCTGTTCTTCTTGAAGAATCTGCACCAGTTGAACCCTTCAGATGA 2205 0.454 MGIKKWTKGRGISVRPRLEKIMKCLCSGEQLGGDEMVPSSESLATRDYSASGYSSRAGEGEQRPDTGNIEEAESSLRESGFLNYEEARALLGRLEYQRGNVEAALHVFEGIDIAAVIPKMKLSMARRVERRKRRSQSDAAPLMSIHAISLLFEAIFLKAKSLQDLGRYREAAQSCKVILDTVESALPEGLPENFGADCKLLETLNKAVELLPELWKLAGFPHEAILSYRQALLCHWNLDMETTAKIQKEFAIFLLYAGSDASPPNLRSQTEGSFVPRNNIEEAVLLLMILLRQFSLKRIEWDPSIIDHLSFALSVSGELRALAGQVEELLPGILDRKERYYTLALCYYGEGEDLVALNLLRKLLSSRENPNCIQALLLASKICGENPNCAEEGVGFARRALTRFQGGCESCDQMGSFTNCLLGVSLSAQARLVVSDSDRITRQSEALEALEAAERTMRERNPTVIFNLSLENAEQRKLDVALYYANQFLKLEAGSNVKGWILLARILSSQKRFMDAEAIINVALDQTGKWDQGELLRTKAKLQTAQGQLKNAIETYTHLLAVLQVQSKSSGVGKRPIKGSGNHDRTLELETWHDLANVYTSLSQWRDAEVCLSKSKAITSHSASRWHATGLLYEAKGLHKEALKAYASALDVEPTHVSSLVSTATNLRQLGNQSLAVVRSFLTDALRLDRTNASAWYNLGLLYKAEGGGSALEATECFEAAVLLEESAPVEPFR* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00483 734 ProSiteProfiles TPR repeat profile. 623 656 IPR019734 GO:0005515
Eupl12g00483 734 PANTHER PROTEIN NPG1 22 734 IPR043376 -
Eupl12g00483 734 MobiDBLite consensus disorder prediction 48 72 - -
Eupl12g00483 734 SUPERFAMILY TPR-like 444 559 IPR011990 GO:0005515
Eupl12g00483 734 SMART tpr_5 623 656 IPR019734 GO:0005515
Eupl12g00483 734 SMART tpr_5 533 566 IPR019734 GO:0005515
Eupl12g00483 734 SMART tpr_5 152 185 IPR019734 GO:0005515
Eupl12g00483 734 SMART tpr_5 693 728 IPR019734 GO:0005515
Eupl12g00483 734 SMART tpr_5 589 622 IPR019734 GO:0005515
Eupl12g00483 734 SMART tpr_5 497 530 IPR019734 GO:0005515
Eupl12g00483 734 Pfam Tetratricopeptide repeat 625 656 IPR019734 GO:0005515
Eupl12g00483 734 Gene3D Tetratricopeptide repeat domain 153 569 IPR011990 GO:0005515
Eupl12g00483 734 Gene3D Tetratricopeptide repeat domain 582 732 IPR011990 GO:0005515
Eupl12g00483 734 Coils Coil 535 555 - -
Eupl12g00483 734 SUPERFAMILY TPR-like 534 707 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00483 Eupl-Chr12 17795584 17806444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00483 14 734 Calmodulin-binding Proteins AT4G28600 58.152 0.0 799
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00483 K21843 - nnu:104600935 1115.14