Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00468 ATGGATCCAGATCAAGGGAAGCTGTTCATTGGAGGGATATCATGGGATACGTCAGAGGAGAAACTGAAGGAATATTTTGGGAACTATGGGGAGGTTTTGCAGACTGTGATTATGCGTGATAAGATCACAGGGAGGCCTAGAGGCTTTGGTTTTGTTGTTTTTGCAGATCCCTTGGTTGTCGATAGGGTTCTTCAGGACAAGCACACCATCGATGGAAGAATGGTGGAGGCTAAAAGGGCTTTATCAAGAGAGGAACAGCACACCTCCTCTAGATCTGGAAACCCTAATGCAGGTAGAAGCTATGGAGGTGGGGGTAATATTAAGACAAAGAAGATATTTGTAGGAGGGTTGCCTCCTACTTTGACAGAAGAAGGATTTCGTCAGTATTTTGAGAGTTATGGTCATGTAACTGATGTAGTAGTTATGTATGATCAAAGTACACAACGGCCTCGTGGATTTGGATTCATCTCCTTTGATACTGAAGAAGCAGTTGATACAGTTTTACACAAGGCCTTCCATGAGTTGAATGGTAAACTTGTGGAAGTCAAGCGCGCTCTTCCAAAAGATGCAAACCCTGGTGGTGGTGGTGGTGGCCGTGCAATGGGTGGTGGGAGTTATCAGGGTTATGGTTCTTCTGGTGCGAACACTGGTACATATGATGGTCGAATGGATGCGAACAGGTACATGCAGCCTCAGGCAACTGGAGGTGGTTTTCAGGGATATGGTTCTTCTGGCTATGGAGCACCGGGCTATGGATATGGTGCGGCAAATAATGGCGTTGGTTATGCTGGCTATGGTGTTGGTGGCTATGGTAGTGCCAATGCCGGGTACAGCGGTCCTGCAGGGGCCTATGGAAACCCTAATGCCCCAAATGCCGGTTATGTAAGTGGCCCACCTGGTGCCCCAAGGAGCCCTTGGGGCACTCAAGCTCCTTCTGGATATGGCTCTGCAGCCTATGGTGCGAATACGGGCTATGGAACCACAGGTCATTGGAGTGCTCCAGGTGCTGGTGGTGCTGCTGGTAGTGGCGGCGCAGTTTCTGCACCAACAGGTCAATCACCAAGTGGAGCTGCTGGCTATGGTAATCAAGGCTATGGGTATGGTGGTTATGGTGCGAATGACGGGTCTTATGCTAACCCTGGTAGTTATGGTGCTGTTGGAGGGCGTGCTGGTAGTACACCAAATAGTAATGCTGGTGGTGGAGCCAGTGGTGGAGAGCAACAGGGGACTGGTGGTTATATGGGTAGTGGTTATGGTGATGCTAATGGGAATCCAGGTTACCCAAACACAGGTTGGAGGTCTGACCCTTCACAAGCTGGGAGTTATGGGGCTTCCCTGGCAAATGGACCTCCAGGTGGTCAGGCGGGTTATGGTGGTGGGTATGGTGGTGCTCAGTCCAGGCAAGCCCAACAGCAGTAA 1419 0.5018 MDPDQGKLFIGGISWDTSEEKLKEYFGNYGEVLQTVIMRDKITGRPRGFGFVVFADPLVVDRVLQDKHTIDGRMVEAKRALSREEQHTSSRSGNPNAGRSYGGGGNIKTKKIFVGGLPPTLTEEGFRQYFESYGHVTDVVVMYDQSTQRPRGFGFISFDTEEAVDTVLHKAFHELNGKLVEVKRALPKDANPGGGGGGRAMGGGSYQGYGSSGANTGTYDGRMDANRYMQPQATGGGFQGYGSSGYGAPGYGYGAANNGVGYAGYGVGGYGSANAGYSGPAGAYGNPNAPNAGYVSGPPGAPRSPWGTQAPSGYGSAAYGANTGYGTTGHWSAPGAGGAAGSGGAVSAPTGQSPSGAAGYGNQGYGYGGYGANDGSYANPGSYGAVGGRAGSTPNSNAGGGASGGEQQGTGGYMGSGYGDANGNPGYPNTGWRSDPSQAGSYGASLANGPPGGQAGYGGGYGGAQSRQAQQQ* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00468 472 MobiDBLite consensus disorder prediction 393 472 - -
Eupl12g00468 472 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Eupl12g00468 472 SUPERFAMILY RNA-binding domain, RBD 108 214 IPR035979 GO:0003676
Eupl12g00468 472 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 472 - -
Eupl12g00468 472 FunFam heterogeneous nuclear ribonucleoprotein 1 105 222 - -
Eupl12g00468 472 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 178 IPR000504 GO:0003723
Eupl12g00468 472 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 73 IPR000504 GO:0003723
Eupl12g00468 472 MobiDBLite consensus disorder prediction 79 104 - -
Eupl12g00468 472 Gene3D - 1 108 IPR012677 -
Eupl12g00468 472 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Eupl12g00468 472 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Eupl12g00468 472 CDD RRM2_Hrp1p 111 188 - -
Eupl12g00468 472 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 187 IPR000504 GO:0003723
Eupl12g00468 472 SMART rrm1_1 111 183 IPR000504 GO:0003723
Eupl12g00468 472 SMART rrm1_1 7 78 IPR000504 GO:0003723
Eupl12g00468 472 Gene3D - 109 191 IPR012677 -
Eupl12g00468 472 SUPERFAMILY RNA-binding domain, RBD 2 105 IPR035979 GO:0003676
Eupl12g00468 472 MobiDBLite consensus disorder prediction 427 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00468 Eupl-Chr12 17328910 17336512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00468 8 186 Eukaryotic Initiation Factors Gene Family AT2G23350 22.099 4.47e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00468 K14411 - nnu:104602803 576.244