Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00461 ATGGCGTCAACCACCACGACAGGCTTAGTAGCCGGTTCTCATCAGAGGAACGAGCTGCACGTAATGCATGGCGATGGCATGGAAGAGCCTCGTCCGCCGACGCGCCAATCGACCTCGAAAATTTGTCGGGTTTGTGGTGATGACATTGGATTTAAAGAGAACGGTGAGTTGTTCGTGGCGTGTTACGAGTGTGGTTTCCCGGTATGTCGGCCTTGTTACGAGTATGAGAGGAGTGAAGGGAATCAGTGCTGCCCTCAGTGCAACACTCGCTACAAGCGTCACAAAGGTTGTTCGAGAGTGCCGGGAGACGATGAAGACGACGGGGATGCCGATGATTTCGAAGATGAATTTCAAATCAAGGGTCATCAAGAAATCCCAGATCAACATCATGTTGTTAATCATTCGGAAAATGGGGACTATAATCAACAGCCATTTCATCCCAATGGCCCGGCTTTCTCCTCCATTGCTGGAAGTATTACTGGTAAGGATTTTGAAGGGGAGAAAGAGATGTACAATAGTGTGGAATGGAAAGAGAGGGTGGAGAAGTGGAAAGCAAGGCAAGAAAAGAGAGGTTTGGTGAGCAAAGAAGATGGAGGAAACGATCAAGGCGATGAAGATGATGTCCTGATGGCTGAAGCTCGGCAACCCCTATGGCGAAAAGTCCCGTTCCCATCGAGCAAGATCAGCCCTTATCGCATAGTCATTGTACTCCGACTTGTCGTCCTCGGCTTCTTCTTACATTTCCGAGTCATGACCCCGGCTAAGGACGCTTATCCACTTTGGCTCATCTCTGTAATTTGCGAGATATGGTTTGCTTTTTCATGGATTCTAGATCAATTTCCCAAGTGGTACCCCATAAACCGTGAAACATATCTAGACCGCCTTTCGATGCGGTTCGAACGTGAAGGCGAGCCAAACCGGTTAGCACCAGTTGATTTTTTTGTGAGTACAGTCGACCCACTTAAGGAACCTCCAATTATAACAGCAAACACAGTCCTCTCGATCCTTGCTGTCGATTATCCGGTCGAGAAGGTGAGTTGCTATGTATCGGACGATGGCGCTTCAATGCTCCTGTTCGACACACTATCGGAAACCGCCGAATTTGCAAGGAGATGGGTACCGTTTTGTAAGAAGTTTAGTATTGAACCAAGGGCTCCTGAGTTCTACTTCAATCAGAAGATCGACTACTTGAAGGACAAGGTGCATCCGAGCTTTGTGAAGGAACGAAGGGCCATGAAAAGAGAATATGAAGAATTCAAAGTGAGGATTAATGCGTTGGTGGCAAAGGCTCAGAAAAAACCAGAAGAAGGTTGGGTGATGCAGGATGGGACCCCATGGCCTGGGAACAACACTCGTGATCATCCGGGCATGATTCAGGTTTACTTGGGGAGCGCAGGTGCACTTGACATAGAAGGTAAGGAGCTGCCCCGTCTTGTGTACGTCTCACGTGAGAAACGACCCGGTTATCAACACCACAAGAAAGCCGGTGCCATGAACGCTCTGGTTCGAGTATCAGCGGTGCTCACAAATGCTCCCTTCTTGTTGAATCTTGATTGTGATCACTATGTCAACAACAGCAAGGCTGTAAGGGAAGCTATGTGTTTTCTGATGGATCCTCAGTTGGGAAAGAAGCTCTGCTACGTCCAATTCCCACAGAGGTTTGATGGCATCGATCTCCATGATAGATACGCTAACCGAAACGTCGTGTTCTTTGATATTAATATGAAAGGCCTAGATGGGGTCCAAGGACCAGTATACGTCGGTACTGGATGCGTATTCAATCGACAAGCATTATACGGATACGACCCACCGGTGTCTGAAAAGAGGCCTAAGATGCACTGTGACTGCTGGCCATCCTGGTGCTGCTGTTGTTTCGGGGGTTCGAGGAAGAAGAAGTCAAAGTCAAAGAAGGGAGAAAGAGGTATGTTTGGACTTGGAGGGAATTATAGCAAGAAGAAGATGAATATGAAGAAGTATCCCAAGAAAGGGTCCTCCCCCCCAGTCTTTGATCTTGAAGAGATTGAAGAAGGGCTCGAAGGATACGACGAGTTGGAGAAATCGTCTCTCATGTCGCAGAAAAACTTCGAGAAGCGATTCGGTCAGTCACCGGTCTTTATTACATCGACAATCATGGAGGAAGGTGGCCTTCCTGAAGGGACAAATTCCACAGCTCTTATTAAGGAGGCCATTCATGTCATTAGCGTCGGCTACGAAGAGAAGACTGAATGGGGCAAAGAGATTGGATGGATCTATGGTTCAGTTACAGAAGACATATTGACAGGCTTCAAGATGCACTGCAGAGGATGGAAGTCAGTGTACTGTGTACCCAAGAGAGCGGCTTTCAAGGGATCGGCTCCGATAAATCTTTCGGATCGGTTGCACCAAGTCCTGAGGTGGGCTCTTGGTTCAGTCGAGATATTCCTTAGTCGTCACTGTCCTCTATGGTATGGATATGGAGGGAAATTGAAATGGCTAGAGAGGCTTGCTTACACTAACACCATTGTCTACCCTTTCACTTCCGTCCCTCTGCTTGCTTACTGCACTATTCCTGCTGTCTGTCTTCTCACTGGAAAGTTCATCATCCCCACTCTTACCAACCTTGCCAGTATATGGTTTATGGCTCTCTTCCTTTCTATCATAACAACTGGAGTGCTCGAGCTCCGGTGGAGTGGTGTTAGCATCCAGGATTGGTGGCGTAATGAGCAGTTTTGGGTGATTGGAGGTGTCTCGGCTCATCTCTTCGCTGTCTTCCAAGGTTTTCTTAAGGTCCTTGGAGGTGTTGACACCAACTTCACTGTAACTTCGAAGACGGCGGACGACGATGAGTTTGGTGATCTTTACCTCTTCAAATGGACTACTCTTCTCATACCACCCACCACATTAATCATCTTGAACATGGTTGGAGTTGTAGCTGGAGTATCTGATGCCATTAACAACGGGTATGGCTCATGGGGTCCTTTATTTGGGAAGTTGTTCTTCGCTTTCTGGGTCATTGTTCACTTGTATCCTTTCCTCAAGGGGCTGATGGGAAAGCAAAACAGGACTCCTACCATTGTAATCCTCTGGTCGATTCTTCTTGCCTCAATTTTCTCCTTGGTTTGGGTCCGAATTGATCCTTTCTTGCCTAAGCAAACAGGGCCGATCCTTAAACAATGTGGGGTGGAGTGCTAG 3171 0.4762 MASTTTTGLVAGSHQRNELHVMHGDGMEEPRPPTRQSTSKICRVCGDDIGFKENGELFVACYECGFPVCRPCYEYERSEGNQCCPQCNTRYKRHKGCSRVPGDDEDDGDADDFEDEFQIKGHQEIPDQHHVVNHSENGDYNQQPFHPNGPAFSSIAGSITGKDFEGEKEMYNSVEWKERVEKWKARQEKRGLVSKEDGGNDQGDEDDVLMAEARQPLWRKVPFPSSKISPYRIVIVLRLVVLGFFLHFRVMTPAKDAYPLWLISVICEIWFAFSWILDQFPKWYPINRETYLDRLSMRFEREGEPNRLAPVDFFVSTVDPLKEPPIITANTVLSILAVDYPVEKVSCYVSDDGASMLLFDTLSETAEFARRWVPFCKKFSIEPRAPEFYFNQKIDYLKDKVHPSFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSAGALDIEGKELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPFLLNLDCDHYVNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDLHDRYANRNVVFFDINMKGLDGVQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMHCDCWPSWCCCCFGGSRKKKSKSKKGERGMFGLGGNYSKKKMNMKKYPKKGSSPPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFITSTIMEEGGLPEGTNSTALIKEAIHVISVGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCVPKRAAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSVPLLAYCTIPAVCLLTGKFIIPTLTNLASIWFMALFLSIITTGVLELRWSGVSIQDWWRNEQFWVIGGVSAHLFAVFQGFLKVLGGVDTNFTVTSKTADDDEFGDLYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVILWSILLASIFSLVWVRIDPFLPKQTGPILKQCGVEC* 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00461 1056 CDD mRING-HC-C4C4_CesA 40 90 - -
Eupl12g00461 1056 SUPERFAMILY RING/U-box 28 112 - -
Eupl12g00461 1056 Pfam Cellulose synthase 311 1049 IPR005150 GO:0016020|GO:0016760|GO:0030244
Eupl12g00461 1056 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 421 604 IPR029044 -
Eupl12g00461 1056 Coils Coil 409 429 - -
Eupl12g00461 1056 SUPERFAMILY Nucleotide-diphospho-sugar transferases 324 874 IPR029044 -
Eupl12g00461 1056 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 214 1023 - -
Eupl12g00461 1056 Pfam Zinc-binding RING-finger 33 108 IPR027934 -
Eupl12g00461 1056 FunFam Cellulose synthase 428 602 - -
Eupl12g00461 1056 FunFam Cellulose synthase 25 116 - -
Eupl12g00461 1056 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 115 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00461 Eupl-Chr12 17229342 17236618 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00461 5 1056 Cell Wall Biosynthesis AT5G17420 67.069 0.0 1442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00461 K10999 - nnu:104600956 1902.1