Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00457 ATGGAGGCGCACCCTGCTTTTTCCATCCAGAGATCAGGCACAAAAGAACTCAGTAATCGGGGAGCGTCCGGAGCTATGTCATCATCCTTACCAGTTCTCCCCATCCCCTTGGAAGATAAGTATCCCAAATTGCCAGATTCCCAACAATTTTCCTTGGAAAGGGAACTGATGACAAATCCAACGGCCCCTCATGCAACTCCATTAACCTCCAACAGCGGGGTCATTGGTCACATATTTTCCTCAGATTCAGGATTCTCTACAAATCTTCATTTCTCTTCCGCTTCACCTCACGAGAGGCATTCAAGAAATGCTCCGTTCATTTCTCAATCATCAAATAATGGAGCATCTTTGCCTTTAACTCATTCTTCTCATTCAATACTATTTCAATCTACAGCATCAAGTCAATACAAAGACAACAGTGATATTTCCTGGTGTCCAGATCCGCTGCAGGGTTTTATAGACTTCCCTGAGAACGTCCCTGTCCAGAACACTCAAATGGAAAGTAGTAATGCTGGTGGCACAGCAATCGAGGACATTACCAAGCGAAGTGATTGGCAGGAGTGGGCAGACCAGCTAATAACTGATGATGACACGGCTCCCAATTGGAGTGAGCTTCTTGTTGACACCGATGTTGTGGATCCTGAACCAAAGATGGCATACCAGGCACTCAAACCATCTTCAAACCTCTCTGTGCACCAGCCCCATACTCATCAGCAGCTTCCCGTTCATTCTGGAGAATTATGTGCTGTCGCTAGCCCTTTGGCCTCGGCCAATGGTGCTCCAGCCAAGGCACGCATGCGGTGGACCCCTGAACTCCACGAGTGCTTTGTAGAAGCTGTCAATCAGCTTGGTGGTAGTGAAAGAGCTACTCCCAAGGGTGTGCTAAAGCTCATGAAAGTTGAAGGCTTGACCATCTACCATGTAAAAAGCCACCTGCAGAAATACAGAACAGCCAGGTACAGACCAGACTCATCAGAAGGAACTTCAGAGAAAAAGATGACTGCTATAGAAGAAATGTCATCTCTAGACCTAAAAACGGGCATTGAGATCACTGAAGCATTGCGACTACAAATTGAAGTTCAGAAACGGTTGCATGAACAACTCGAGATCCAGAGAAATCTACAGTTGCGAATAGAAGAACAAGGGAGGTATCTCCAAATGATGTTTGAGAAGCAATGCAAGCCAGGTAGTGACAAGCTGAAGGAGTCGTCGTCCACTATGGATGACCCCTCTGCTCTGTCGTCAGACCTAATGCAGCATTCCCCTGCCAAAAACGAAGCAGAAGCATTGGAAAAGGATCATGCCAAAACAGGAATTGATGCAATCCCTGCCAATGCAGCACCAGGAGAAAGCTCCCAGAAGTTGGGGGGGAAGCAAAAGGCGCATGAAACGGAAGCCACCGAGGATCTTGAACCAGATGCTGTTGGTGGGCCCCATTCTCCACCCACAAAGCGTGCCAGAGCAGAAGACGCTGCTGTGTCATCTGTCAAATCGACATCAGAATAA 1506 0.4741 MEAHPAFSIQRSGTKELSNRGASGAMSSSLPVLPIPLEDKYPKLPDSQQFSLERELMTNPTAPHATPLTSNSGVIGHIFSSDSGFSTNLHFSSASPHERHSRNAPFISQSSNNGASLPLTHSSHSILFQSTASSQYKDNSDISWCPDPLQGFIDFPENVPVQNTQMESSNAGGTAIEDITKRSDWQEWADQLITDDDTAPNWSELLVDTDVVDPEPKMAYQALKPSSNLSVHQPHTHQQLPVHSGELCAVASPLASANGAPAKARMRWTPELHECFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPDSSEGTSEKKMTAIEEMSSLDLKTGIEITEALRLQIEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKPGSDKLKESSSTMDDPSALSSDLMQHSPAKNEAEALEKDHAKTGIDAIPANAAPGESSQKLGGKQKAHETEATEDLEPDAVGGPHSPPTKRARAEDAAVSSVKSTSE* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00457 501 Coils Coil 351 371 - -
Eupl12g00457 501 MobiDBLite consensus disorder prediction 394 501 - -
Eupl12g00457 501 Pfam Myb-like DNA-binding domain 265 316 IPR001005 -
Eupl12g00457 501 Gene3D - 262 321 - -
Eupl12g00457 501 MobiDBLite consensus disorder prediction 1 27 - -
Eupl12g00457 501 MobiDBLite consensus disorder prediction 11 26 - -
Eupl12g00457 501 MobiDBLite consensus disorder prediction 406 421 - -
Eupl12g00457 501 FunFam Myb family transcription factor 262 320 - -
Eupl12g00457 501 Pfam MYB-CC type transfactor, LHEQLE motif 348 394 IPR025756 -
Eupl12g00457 501 NCBIfam myb-like DNA-binding domain, SHAQKYF class 263 317 IPR006447 GO:0003677
Eupl12g00457 501 SUPERFAMILY Homeodomain-like 261 317 IPR009057 -
Eupl12g00457 501 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 260 320 IPR017930 -
Eupl12g00457 501 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 238 463 IPR044848 GO:0003700
Eupl12g00457 501 MobiDBLite consensus disorder prediction 90 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00457 Eupl-Chr12 17154640 17177963 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00457 1 392 G2-like Transcription Factor Family AT4G28610 50.623 3.91e-112 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Eupl12g00457 Myb_DNA-binding 9.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00457 - - ming:122090047 674.855