Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00453 ATGCTGGCCATAGGCATTTCTGAGGAAACTGTAAGACCAGTCCTAAAGAATCTCTTGAAATTGTATGATAAAAACTGGGAACTTATCGAAGAGGAAAACTATAGAGTTCTTGCAGATGCTATATTTGACTACGAGGACAGTAAGGCAGAGGAAGCAAAGAAGGAAGCTCAGTTGCACGAAGAGTCTGGACCTCCATTGAAAAGATTGCGTTCGAGACAACAAGAAGATCAGGCGTCACCTTCTGTGGGTAACACCAGCCCATTGGCACACAAAGCCAAAGGAAAGGAGCCTTTTTCTCCTCAAGTTGCTTCCAGAGAGAAAAGAACAGTTTCCGAGAGGGCCTCTTCTGGGGTGTGCTTGAAAGAGCCAAAGGTTGATCCTGGCATTGTCTTTTTTCCCAAAGAGAAGTTGCCCAATCGTCATCATCATAATGCTTTTGTTAAGCCCAAAAGTGAGCCATTCACTGATGACTTTCCCCAATTTGAGATTCCGATTGCTGTGATCCATCCACTAGGCCCACCTCTCACTAGAAATGAAGATGGTTACATAATTGGAAATGATTCTAGTGGGAAAGCTGATGTTCTGGAATCCATGGCATCCGAACACGTGGACAGGGATGATGAAAGTGTTTCAGACACCAAAGGCAGGGGCGGAACAATTCTTGAGCCTAGAAACATCCCAGAGACATCTCCTGCTAATTTTGAGATTGCTTCCTCGCCATTAGGAGAGGTGAAAATTTCTCTTAGCTGTAACTCTGCCCTTGGACGGCCAGACTTCCATATGCCGAGTCTAGATGCAGTTCTAAAAATGGTAGAGGATACATGTCTCAAATCATTCAGAATTATTGAGCCCAATTTTTCTTTGATGAAGCTGATGGAAGAATTGTGCCAATACTTTTTGGAATCAGGTACTGATTCTATAGATGATAAGCAGGAAAAATTCATAAATATAATTCCAACCCTTGATTTATTAAAGAAATCTAATATGCAAAATGATTTGGGTGCCAAAGGCGATCAGCAAAGCAATATTCATATGCCTGCAAACTTTTTAAATGGATCACCCAATTTTCATTCCTCCGCTGAGGTGGGTATCCCCCAAATTTCAGGACTTCTGGCTCTGAATTGCCTTCGTCGTATTATACAACCTGATCAAAAAGTTCTTGGGAAGACCAATGGTGAAAGGGATAAGAAAAAGGATCTGAAAGGTTCACAGTCATCAAATTCACGTAGTTTGGTGGTTGTTCAGCAGCACCAATTCACCCTTGATGGTGTAAGGCCACTCCTTGATGTGAATGACATATCCAAAGGTGAAGAAGGATTCAAAATTTCATTGGTAAATGAAGTCACCAGTGAGACATACACACCTCTGTCCTTTTACTACATACCACAAAACATAGTTTATCGTAATGCATACGTGAATTTCTCGCTTGCTCGTATTGGAGATGAAGATTGTTGCGCAAACTGTTTTGGTGACTGTATGTTATCATCCATACCTTGTGCATGTACACGTGAGACTGGGGGTGAGTTTGCCTACACACTAGAAGGTCTGGTTAAAAAAGAGTTTCTGGATAAATGTATTTCTATGATCTGTGATCCTCAACAAAATTGCCTCTTTTATTGTAAAGATTGCCCCCTAGAAAGATTTAAGAATGAGGATCTTCCTGACCCGTGCAAGGGCCATTTAGTGAGGAAGTTCATTAAAGAGTGCTGGAGTAAATGTGGCTGCAACAAGCAATGTGGAAATCGAGTTGTGCAGAGAGGCATAACATGCAATTTACAGGTATTTATGACACCCGAAGGAAAGGGGTGGGGTCTCCGAACACTTGAGGACTTGCCAAGAGGTAGTTTTGTGTGTGAATATGTTGGGGAAATATTAACCAACACGGAGCTGGACGAGCGAAATATCCGAAGCACTGGTAATGAGAAACATACATATCCGGTGCTACTAGATGCTGATTGGGGTTCAGAAGGTATCTTAAAGGATGAAGAGGCCCTTTGTTTAGATGCTACATATTTGTTTAGATGCTTCAAATTTTAA 2037 0.4173 MLAIGISEETVRPVLKNLLKLYDKNWELIEEENYRVLADAIFDYEDSKAEEAKKEAQLHEESGPPLKRLRSRQQEDQASPSVGNTSPLAHKAKGKEPFSPQVASREKRTVSERASSGVCLKEPKVDPGIVFFPKEKLPNRHHHNAFVKPKSEPFTDDFPQFEIPIAVIHPLGPPLTRNEDGYIIGNDSSGKADVLESMASEHVDRDDESVSDTKGRGGTILEPRNIPETSPANFEIASSPLGEVKISLSCNSALGRPDFHMPSLDAVLKMVEDTCLKSFRIIEPNFSLMKLMEELCQYFLESGTDSIDDKQEKFINIIPTLDLLKKSNMQNDLGAKGDQQSNIHMPANFLNGSPNFHSSAEVGIPQISGLLALNCLRRIIQPDQKVLGKTNGERDKKKDLKGSQSSNSRSLVVVQQHQFTLDGVRPLLDVNDISKGEEGFKISLVNEVTSETYTPLSFYYIPQNIVYRNAYVNFSLARIGDEDCCANCFGDCMLSSIPCACTRETGGEFAYTLEGLVKKEFLDKCISMICDPQQNCLFYCKDCPLERFKNEDLPDPCKGHLVRKFIKECWSKCGCNKQCGNRVVQRGITCNLQVFMTPEGKGWGLRTLEDLPRGSFVCEYVGEILTNTELDERNIRSTGNEKHTYPVLLDADWGSEGILKDEEALCLDATYLFRCFKF* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00453 678 Pfam Ubiquitin-binding WIYLD domain 1 46 IPR018848 -
Eupl12g00453 678 Gene3D - 1 47 IPR043017 -
Eupl12g00453 678 ProSiteProfiles Pre-SET domain profile. 484 587 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Eupl12g00453 678 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 671 - -
Eupl12g00453 678 SMART preset_2 430 574 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Eupl12g00453 678 Pfam Pre-SET motif 433 582 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Eupl12g00453 678 Gene3D SET domain 413 678 IPR046341 -
Eupl12g00453 678 ProSiteProfiles SET domain profile. 590 678 IPR001214 GO:0005515
Eupl12g00453 678 MobiDBLite consensus disorder prediction 49 116 - -
Eupl12g00453 678 MobiDBLite consensus disorder prediction 49 74 - -
Eupl12g00453 678 MobiDBLite consensus disorder prediction 387 409 - -
Eupl12g00453 678 SUPERFAMILY SET domain 440 674 IPR046341 -
Eupl12g00453 678 Pfam SET domain 602 650 IPR001214 GO:0005515
Eupl12g00453 678 MobiDBLite consensus disorder prediction 200 229 - -
Eupl12g00453 678 MobiDBLite consensus disorder prediction 388 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00453 Eupl-Chr12 17100630 17108898 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00453 566 670 C2H2 Transcription Factor Family AT2G23740 45.283 5.10e-18 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Eupl12g00453 Pre-SET 5.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00453 - - msin:131240542 795.038