Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00443 ATGATCTGCGCAATTTCTGGCCAAGTGCCGGAAGAGCCAGTGATTTCGAAGAAATCCGGACTGCTCTTTGAGAAGCGATTGGTCGAGCGTCATGTAGCGGATTATGGAAAATGCCCTGTGACCGGGGAGCCACATACTTTGGATGATCTTGTGTCCGTCAAAACAAATAAGGAAGTGAAGCCTAGGCCTTTACAGGCGGCAAGCATCCCTGGGTTGCTTGGAATGTTCCAAATTGAGTGGGATCACTTGATGCTATCACATTTTGCATTGGAGCAGCAACTACATACAGCAAGGCAAGAGCTAAGTCATGCTTTATACCAGCATGATGCTGCTTGCCGCGTTATTGCAAGACTGAAAAAAGAAAGGGATGAAGCAAGGGCACTATTGGCTCAGGCGGAAAGGCAGTTTCCAACGCCATCATCAACTGCTGCTGCAGCAAATGCCTCGGTGCTTAGCAATGGAAAGAGAGCTGCTGAGGATGAGGAGTTGGGCCCTGGTGAAAAGAAAGTTCGCCTGGGTATATCAGCTGATATCATTGCAGAGCTCACTGACTGTAATGCTATGCTTTCACAACAGCGGAAAAAGCGGCAGATCGCTACAACATTGGCTCCCATTGATGCCTTGGAGAGGTACACCCAGCTCTCCAGTCATCCCCTTCACAAAACTAGCAAGCCGGGCATTTTGTCAGTTGATATCCATCCCTCTAAGGATATCATTGCAACTGGAGGGGTTGATGCAAATGCTGTTCTTTTTGATCGAACATCTGAGCAGATCTTATCTACGCTCAGTGGCCACTCAAAGAAGGTTACCAGTGTAAAATTTGTACCCCGGGATGATTTATTTGTTACTGGTTCAGCGGATAAGACAGTTCGTGTATGGCAAGGTTCTGAAGATGGGGACTATAAATGTCGGCACATCTTAAAAGATCATACTGCTGAGGTGCAAGCTGTCACAATCCATGCCACCGGCAACTACTTTGTGACTGCATCACTTGATAATACATGGTGCTTTTATGATCTTTCTTCTGGATTATGCCTCACTCAGGTTGGGGATGCTTCAGGGGTGGAGGGCTATACATCAGCTGCCTTTCATCCGGATGGTCTCATCCTCGGAACTGGCACCTCAGAGGCTCTTGTTAGAATATGGGATGTTAAAAGTCAGTCAAATGTTGCGAAGTTCGATGGGCATATTGGACCAGTAACTGCCATATCTTTCTCTGAAAATGGCTACTTCCTGGCGACTGCAGCTCATGATGGTGTTAAGCTGTGGGATCTACGCAAACTGAGGAACTTCCGGACCTTCACTCCCTATGATTCAAATACACCAACTAACTCTGTGGAATTTGACCATAGTGGAAGTTATCTTGCAATTGCAGGCTCGGACATAAGAATTTACCAAGTTGCCAATGTTAAGTCGGGATGGAATTGTATCAAAACTTTCCCAGATTTGTCAGGCACAGGGAAAGCATCATGTGTGAAATTTGGCCCAGATGCCAAATACATGACAGTAGGTTCAATGGACCGGAACCTCCGCATCTTTGGCCTGCCTGGGGATGGTTCAGAAGAGTCTTAG 1572 0.4676 MICAISGQVPEEPVISKKSGLLFEKRLVERHVADYGKCPVTGEPHTLDDLVSVKTNKEVKPRPLQAASIPGLLGMFQIEWDHLMLSHFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARALLAQAERQFPTPSSTAAAANASVLSNGKRAAEDEELGPGEKKVRLGISADIIAELTDCNAMLSQQRKKRQIATTLAPIDALERYTQLSSHPLHKTSKPGILSVDIHPSKDIIATGGVDANAVLFDRTSEQILSTLSGHSKKVTSVKFVPRDDLFVTGSADKTVRVWQGSEDGDYKCRHILKDHTAEVQAVTIHATGNYFVTASLDNTWCFYDLSSGLCLTQVGDASGVEGYTSAAFHPDGLILGTGTSEALVRIWDVKSQSNVAKFDGHIGPVTAISFSENGYFLATAAHDGVKLWDLRKLRNFRTFTPYDSNTPTNSVEFDHSGSYLAIAGSDIRIYQVANVKSGWNCIKTFPDLSGTGKASCVKFGPDAKYMTVGSMDRNLRIFGLPGDGSEES* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00443 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 307 348 IPR001680 GO:0005515
Eupl12g00443 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 294 IPR001680 GO:0005515
Eupl12g00443 523 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Eupl12g00443 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 392 IPR001680 GO:0005515
Eupl12g00443 523 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Eupl12g00443 523 SUPERFAMILY WD40 repeat-like 198 513 IPR036322 GO:0005515
Eupl12g00443 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Eupl12g00443 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 433 IPR001680 GO:0005515
Eupl12g00443 523 Coils Coil 115 135 - -
Eupl12g00443 523 Gene3D - 202 515 IPR015943 GO:0005515
Eupl12g00443 523 SUPERFAMILY RING/U-box 1 53 - -
Eupl12g00443 523 CDD RING-Ubox_PRP19 1 54 - -
Eupl12g00443 523 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 515 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Eupl12g00443 523 CDD WD40 226 513 - -
Eupl12g00443 523 Pfam Prp19/Pso4-like 66 131 IPR013915 -
Eupl12g00443 523 FunFam pre-mRNA-processing factor 19 199 515 - -
Eupl12g00443 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 294 - -
Eupl12g00443 523 SMART WD40_4 210 252 IPR001680 GO:0005515
Eupl12g00443 523 SMART WD40_4 473 514 IPR001680 GO:0005515
Eupl12g00443 523 SMART WD40_4 427 466 IPR001680 GO:0005515
Eupl12g00443 523 SMART WD40_4 255 294 IPR001680 GO:0005515
Eupl12g00443 523 SMART WD40_4 300 339 IPR001680 GO:0005515
Eupl12g00443 523 SMART WD40_4 342 383 IPR001680 GO:0005515
Eupl12g00443 523 SMART WD40_4 386 424 IPR001680 GO:0005515
Eupl12g00443 523 Pfam WD domain, G-beta repeat 389 424 IPR001680 GO:0005515
Eupl12g00443 523 Pfam WD domain, G-beta repeat 302 339 IPR001680 GO:0005515
Eupl12g00443 523 Pfam WD domain, G-beta repeat 257 293 IPR001680 GO:0005515
Eupl12g00443 523 Pfam WD domain, G-beta repeat 475 513 IPR001680 GO:0005515
Eupl12g00443 523 FunFam Pre-mRNA-processing factor 19, putative 1 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00443 Eupl-Chr12 16879580 16892383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00443 1 522 U-box Gene Family AT1G04510 73.614 0.0 796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00443 K10599 - msin:131245781 920.998