Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00431 ATGTACTTGAAAGTCGCAAATCTGGAAAATTTGACATCCAACCGGTCAATGCAAATGATTGCTTTCCCCAAAAAAAAAAGAAAAAAGAAAAAGAAAAATAAGAAGGAGGATATGTTTGGCTATAGGGAAAAGGGAGGAATTTCCATTAATGTATTCGAATCCGAACAATCTCTTGGGTGTGTTTGGCTGGGGTCAAGTACTGTCCTCGTCAAGGATAATTTGACTGGCATACAATCAACAAAAGTGCAAAAAGCCTGCCTTTCAAACCCTAGAAATCTTACAGGGATATCTTACATTAATGAGACCTTAAATATGAATAAAATGGAGGAACAACAAGAGGAAGTAGAGAATGTAGAAAGTGCTTCTAGCGATTCATTTATTGATGATTCCGATGATGATGACCCATCAATGTTCGAACATGACGATGAATCGCATCTTGAGGCACCTTTGACTGATGCAGAAATAGAAGAGCTAATTGCTGAATTTTTGGAAGTTGAGAGTAAGGCAGCAGAGGCGCAAGAATCTCTTGAAAAGGAGTCACTTGCACAAGTGGAGAGTGAAGTAAGAGCAGAGTTAGCCGAGAATCTTCACGGAGATGATTTGGAGATGGCTGTTACAACAGAAATGAAAACTTTCATAGAAGAATGGGAGATTAAGCTAGATGAATTAGAGACTGAGAGTGCTCACTTGTTGGAACAACTTGATGGGGCTGGTATTGACCTACCTAGCCTCTATAAATCGATTGAAAGCGAGGCTCCTAATGGATGCTCCACTGAAGCTTGGAAAAAAAGGACGCACTGGGTGGGATCGCAGGTAACTTGTGACATTACTGAATCAATTACAGATGCAGAAAAGTATCTGCAATCCCAATGGCCTGTGAGAAGAAAACATGGTAGACTGTTGGAGGAAGGTGCTAGTGGATTCCTTGGGAAAAAACTTGCTAAGGAAAACAGCAGAGAGGCCATAGAAGAAAATTCAGAGAAAGACTGGAGCTCCTTTAATGAAATCATTCAATCTCATCGTTTCTTGGAAGACGACAATTCATTTGGTGGCAAGCATTGGGCTTCCGTTTACTTGGCCAGTACACCACAGCAAGCTGCAAACATGGGGCTGAAGTTGCCTGGAGTTGATGAGGTGGAGGAGATAAATGACATTGAGGGAAACTCCAGCGATCCATTTTATGCAGATGCCATTGCAAATGAAAAGGAAATAGATCTTTCTGAAGAACAGAAGAAAAATTTTCGGAAGGTCAAAGAAGAGGATGATGCAAATATTGCATGGAAGCTTCAACTTCGTTTGAAACGAAGAAGACATAGAATCAGATCTAAACAGGAGGCCATTCAGCAAGAGGTTGGCCCTGTTGATCGGGTCTTAGAGAGCAACTTAAATGACTCCATGCCTTCGAAAGAGTGTTCTCAACCTGTTTTGGGTGAGAAAACTTGTGAAGTTAGTGAAGGTGCACCCAATGCTGACAATGGTGATACTTCTCAAAATTTGAAGGCTGAGGTGCTTGGAATTATTGAAACTTCTAATGAGCTCGACCAGGAAAGGCCAATGGCTAATGGTACATCCTCAGTGCTTGCTGAATCTACATCGCCTGATTTAACTGAACCCAGAGGGGAGAAGCGTTCACATGATAGTGAGGATCTGGAGATTGATAACAAAAGGAGTCGGACTGTTATTATAGATAGTGATGATGAAGTGCATGTGGTGGAGGATAAATCTGCTTCTCATATTTGTGGTGAGACTAACATGGATGCACAATCCTTATTGCAAGTGAAGGAAGAAGCCGATTTTGAAAATGCTGATTCTCTTCCTCTCCGGAGTCCGAATGAGACCGAAGTTTCTGAGAATTTTCATTGCACTGCATGTACTAAAGTCGTGGGAGCCAGTGAAGTGCACCAGCATCCACTTTTGAAAGTCATCATTTGTGAAAATTGCAAGTGTGTGATAGAAGAGAAAATGCAGGAAAAGGACCCTGATTGCTCTGAGTGTTACTGTGGATGGTGTGGAAGGTGCAATGACCTAATTAGTTGTAAATCTTGTAAAATGTTATTCTGTATAAAATGTATAAAGTGGAATTTTGGTGAAGAACGCTTATCAGAAGTTCAAGCCTCTGGCTGGCATTGTTGTTGCTGTTCTCCAAATCTCCTGCAACTGTTAACTGTAGCATGTGAGAAGGCCCTTGGAGCTGGAAGTCTTTTGGTTTCTAGCTCCGACAGTGATTCAGATCTGTCAAACACTCAGATCAATGTTTCAATCAGCTCTAAGAAAAGACGGAAAAAGACGATTAGAAAGATCCTCGATGATGCCGAACTTGGAGAAGAAACCAAGCGAAAAATTGCAATTGAAAAGGCACGTCAAGAACATCTCAAGTCATTGCAAGTACAGTATGCTGCCAAATCATGGCCTATTAATACTGCAAGTTGTAATGGGAATGCACTAGACGGTGCCAGTGTTGAAGTGCTGGGTGATGCAACAAAAGGTTATATAGTGAATGTTGTGAGGGAGAAAGATGAGGAAGCAGTGAGGATTCCTCCCAGTATCTCGGCTAAATTAAAACCTCATCAGATTGCAGGGATACGATTTATGTGGGAAAATATCATACAGTCTGTCAGAAAGGTCAAATCTGGGGATAAAGGTCTTGGTTGCATACTAGCTCATACCATGGGCCTTGGTAAAACGTTTCAGGTCATAGCCTTTCTCTACACTGCTATGAGAAGTGTTGATTTAGGATTTAAAACTGCACTTATTGTTACACCTGTAAATGTCCTACACAATTGGCGGCAAGAGTTTGTGAAGTGGAGACCTCTAGAATTAAAGCGTCTTCATGTCTTTATGCTGGAAGATGTTTCAAGGGATAGAAGGGGAGATTTGCTTGCAAAGTGGAGATCTAAGGGGGGCATATTTTTGATTGGCTATGCTTCTTTTCGAAATTTGTCATTGGGAAAGCATGTTAAGGATAGACATGTGGCTAGAGAGATTTGTTATGCCCTGCAGGATGGACCTGATATATTAGTTTGTGATGAGGCCCATATGATCAAGAACACAAGGGCTGATATCACCCAAGCATTGAAGCAAGTGAAAAGCCAGAGAAGGATTGCATTAACAGGATCACCTCTACAAAACAATCTAATGGAATATTATTGTATGGTTGATTTTGTAAGAGAAGGATTTCTTGGCAGTAGCCATGAGTTTAGGAACAGGTTCCAAAATCCTATCGAGAATGGTCAACATACTAATTCTACATCAGTTGATGTAAAAATTATGAACCAAAGGTCACATATCCTCTATGAACAACTAAAAGGATTTGTCCAGCGGATGGACATGAATGTGGTGAAGAAGGACTTGCCCCCTAAAACTGTATATGTAATTGCTGTAAAGCTTTCGCCATTACAGAGGAAGTTATACAAAAGATTCCTTGATGTGCATGGATTCACAACTGACAAGGTCTCTGGTGAAAAAATAATAAAGAGGAGTTGCTTTTTTGCTGGATATCAAGCATTAGCTCAGATATGGAACCATCCCGGGCTCTTGCAAGTGGCCAAAGAACACAGAGACCACCTAAGACGTGAAGATGCTGTTGAAAATTTTCTCGTAGATGACAGCTCTAGTGATGATAACGTAGAGCGTGATATGCTAATTGGAGAAAAGCAGAGGACCAAGAATGATTTCACACATAAAAAAAGTGCTAATGGCTTTCTTCATGAGGGCTGGTGGCAGGATCTTCTTCGTGAAAAGAATTATAAAGACGTTGATTACAGTGGTAAAATGGTTTTGCTACTTGATATTCTATCTATGAGTGCTGCGGTGGGTGATAAGGCACTGGTTTTCAGCCAGAGCTTAACAACTCTAGATCTGATAGAGCTATATCTTTCAAAATTAACACGACAAGGGCGAGAAGGGAAATACTGGAAACAAGGAAAGGACTGGTACAGATTAGATGGAAGTACAGAGGGTTCTGAAAGACAAAAGCTGGTTGAAAGGTTTAATGAGCCCATAAATAAAAGGGTGAAATGCACTTTGATATCAACCCGAGCTGGATCTTTGGGAATCAACCTTCATGCTGCTAACCGTGTAATTATTGTTGATGGTTCATGGAATCCGACTTATGATCTTCAGGCTATATATCGAGTTTGGAGGTATGGCCAGAGGAAGCCAGTTTATGCTTACCGCTTGATGGCTCATGGAACAATGGAAGAAAAGATATATAAACGTCAGGTCACAAAGGAGGGTCTTGCTGCAAGGGTGGTGGATAAACAGCAAATACATAGAACTATGTCTAAAGAGGAGATGTTACATCTCTTTGATTTTGGTGATGATGAGTATTCAGATGTAGTGCAAGAGCTGGGCCAAGAGATCCGACCAACATGTCATCATGACATGACTGGTCAAGATGCCGCTTCACTGAAGCAGAAGTTGCCTCATGGAAGCTGCTCTTCTGACAAAATGATGGAAAGCTTACTTAGCAAACATTATCCACGGTGGATTGCAAATTACCATGAACATGAGACACTTTTGCAAGAGAATGAAGACGAGAAGCTGTCAAAAGAGGAGCAGGACATGGCCTGGGAAATATTCCGGCGTACTTTAGAGTGGGAGGAGGTGCAAAGAGTTTCTCTAGATGAATCATTGTTTGAGCGTAAGCCACCTGTTGGTAATGTTGCTCCTGCTGCACCAGAGAGCAGCAGCCTTGTACAATCCAGGGGCAGTTCAAGGAACCGCTTGGTGCAGCGGAAATGCACCAACCTTTCACACTTGCTGACCCTGAGAAGCCAGGGCACCAAAGCTGGTTGCAGTACCGTCTGTGGAGAATGTGCACAGGAAATCAGCTGGGAGAACCTTAATAGGGATGGCAAAACAGCAAGTTTGGCTTGCTGGTGTCTGATTGCTGCAGAAGAGTTGATTTGA 4911 0.4178 MYLKVANLENLTSNRSMQMIAFPKKKRKKKKKNKKEDMFGYREKGGISINVFESEQSLGCVWLGSSTVLVKDNLTGIQSTKVQKACLSNPRNLTGISYINETLNMNKMEEQQEEVENVESASSDSFIDDSDDDDPSMFEHDDESHLEAPLTDAEIEELIAEFLEVESKAAEAQESLEKESLAQVESEVRAELAENLHGDDLEMAVTTEMKTFIEEWEIKLDELETESAHLLEQLDGAGIDLPSLYKSIESEAPNGCSTEAWKKRTHWVGSQVTCDITESITDAEKYLQSQWPVRRKHGRLLEEGASGFLGKKLAKENSREAIEENSEKDWSSFNEIIQSHRFLEDDNSFGGKHWASVYLASTPQQAANMGLKLPGVDEVEEINDIEGNSSDPFYADAIANEKEIDLSEEQKKNFRKVKEEDDANIAWKLQLRLKRRRHRIRSKQEAIQQEVGPVDRVLESNLNDSMPSKECSQPVLGEKTCEVSEGAPNADNGDTSQNLKAEVLGIIETSNELDQERPMANGTSSVLAESTSPDLTEPRGEKRSHDSEDLEIDNKRSRTVIIDSDDEVHVVEDKSASHICGETNMDAQSLLQVKEEADFENADSLPLRSPNETEVSENFHCTACTKVVGASEVHQHPLLKVIICENCKCVIEEKMQEKDPDCSECYCGWCGRCNDLISCKSCKMLFCIKCIKWNFGEERLSEVQASGWHCCCCSPNLLQLLTVACEKALGAGSLLVSSSDSDSDLSNTQINVSISSKKRRKKTIRKILDDAELGEETKRKIAIEKARQEHLKSLQVQYAAKSWPINTASCNGNALDGASVEVLGDATKGYIVNVVREKDEEAVRIPPSISAKLKPHQIAGIRFMWENIIQSVRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVDLGFKTALIVTPVNVLHNWRQEFVKWRPLELKRLHVFMLEDVSRDRRGDLLAKWRSKGGIFLIGYASFRNLSLGKHVKDRHVAREICYALQDGPDILVCDEAHMIKNTRADITQALKQVKSQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSVDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVYVIAVKLSPLQRKLYKRFLDVHGFTTDKVSGEKIIKRSCFFAGYQALAQIWNHPGLLQVAKEHRDHLRREDAVENFLVDDSSSDDNVERDMLIGEKQRTKNDFTHKKSANGFLHEGWWQDLLREKNYKDVDYSGKMVLLLDILSMSAAVGDKALVFSQSLTTLDLIELYLSKLTRQGREGKYWKQGKDWYRLDGSTEGSERQKLVERFNEPINKRVKCTLISTRAGSLGINLHAANRVIIVDGSWNPTYDLQAIYRVWRYGQRKPVYAYRLMAHGTMEEKIYKRQVTKEGLAARVVDKQQIHRTMSKEEMLHLFDFGDDEYSDVVQELGQEIRPTCHHDMTGQDAASLKQKLPHGSCSSDKMMESLLSKHYPRWIANYHEHETLLQENEDEKLSKEEQDMAWEIFRRTLEWEEVQRVSLDESLFERKPPVGNVAPAAPESSSLVQSRGSSRNRLVQRKCTNLSHLLTLRSQGTKAGCSTVCGECAQEISWENLNRDGKTASLACWCLIAAEELI* 1637
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00431 1636 CDD ADDz_ATRX 617 715 - -
Eupl12g00431 1636 Pfam SNF2-related domain 875 1178 IPR000330 GO:0005524|GO:0140658
Eupl12g00431 1636 SMART ultradead3 849 1070 IPR014001 -
Eupl12g00431 1636 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 875 1058 IPR014001 -
Eupl12g00431 1636 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 839 1107 IPR027417 -
Eupl12g00431 1636 Pfam Helicase conserved C-terminal domain 1260 1383 IPR001650 -
Eupl12g00431 1636 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1113 1450 IPR027417 -
Eupl12g00431 1636 MobiDBLite consensus disorder prediction 535 554 - -
Eupl12g00431 1636 MobiDBLite consensus disorder prediction 514 532 - -
Eupl12g00431 1636 Gene3D - 1118 1462 IPR027417 -
Eupl12g00431 1636 Coils Coil 1500 1520 - -
Eupl12g00431 1636 CDD SF2_C_SNF 1251 1394 - -
Eupl12g00431 1636 ProSiteProfiles ADD domain profile. 609 741 IPR025766 -
Eupl12g00431 1636 Coils Coil 155 175 - -
Eupl12g00431 1636 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1263 1431 IPR001650 -
Eupl12g00431 1636 PANTHER RAD54-LIKE 120 1621 IPR044574 GO:0016887
Eupl12g00431 1636 SMART helicmild6 1286 1383 IPR001650 -
Eupl12g00431 1636 MobiDBLite consensus disorder prediction 509 554 - -
Eupl12g00431 1636 Gene3D - 824 1107 IPR038718 -
Eupl12g00431 1636 Coils Coil 213 233 - -
Eupl12g00431 1636 MobiDBLite consensus disorder prediction 111 149 - -
Eupl12g00431 1636 MobiDBLite consensus disorder prediction 1552 1571 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Eupl12g00431 Eupl-Chr12 16587709 16682969 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00431 863 1413 RAD5 or RAD16-like Gene Family AT1G02670 25.901 7.09e-24 107
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl12g00431 SNF2_N 2.9e-51 CL0023
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00431 K10779 - nnu:104602758 2280.37