Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Eupl12g00431 | ATGTACTTGAAAGTCGCAAATCTGGAAAATTTGACATCCAACCGGTCAATGCAAATGATTGCTTTCCCCAAAAAAAAAAGAAAAAAGAAAAAGAAAAATAAGAAGGAGGATATGTTTGGCTATAGGGAAAAGGGAGGAATTTCCATTAATGTATTCGAATCCGAACAATCTCTTGGGTGTGTTTGGCTGGGGTCAAGTACTGTCCTCGTCAAGGATAATTTGACTGGCATACAATCAACAAAAGTGCAAAAAGCCTGCCTTTCAAACCCTAGAAATCTTACAGGGATATCTTACATTAATGAGACCTTAAATATGAATAAAATGGAGGAACAACAAGAGGAAGTAGAGAATGTAGAAAGTGCTTCTAGCGATTCATTTATTGATGATTCCGATGATGATGACCCATCAATGTTCGAACATGACGATGAATCGCATCTTGAGGCACCTTTGACTGATGCAGAAATAGAAGAGCTAATTGCTGAATTTTTGGAAGTTGAGAGTAAGGCAGCAGAGGCGCAAGAATCTCTTGAAAAGGAGTCACTTGCACAAGTGGAGAGTGAAGTAAGAGCAGAGTTAGCCGAGAATCTTCACGGAGATGATTTGGAGATGGCTGTTACAACAGAAATGAAAACTTTCATAGAAGAATGGGAGATTAAGCTAGATGAATTAGAGACTGAGAGTGCTCACTTGTTGGAACAACTTGATGGGGCTGGTATTGACCTACCTAGCCTCTATAAATCGATTGAAAGCGAGGCTCCTAATGGATGCTCCACTGAAGCTTGGAAAAAAAGGACGCACTGGGTGGGATCGCAGGTAACTTGTGACATTACTGAATCAATTACAGATGCAGAAAAGTATCTGCAATCCCAATGGCCTGTGAGAAGAAAACATGGTAGACTGTTGGAGGAAGGTGCTAGTGGATTCCTTGGGAAAAAACTTGCTAAGGAAAACAGCAGAGAGGCCATAGAAGAAAATTCAGAGAAAGACTGGAGCTCCTTTAATGAAATCATTCAATCTCATCGTTTCTTGGAAGACGACAATTCATTTGGTGGCAAGCATTGGGCTTCCGTTTACTTGGCCAGTACACCACAGCAAGCTGCAAACATGGGGCTGAAGTTGCCTGGAGTTGATGAGGTGGAGGAGATAAATGACATTGAGGGAAACTCCAGCGATCCATTTTATGCAGATGCCATTGCAAATGAAAAGGAAATAGATCTTTCTGAAGAACAGAAGAAAAATTTTCGGAAGGTCAAAGAAGAGGATGATGCAAATATTGCATGGAAGCTTCAACTTCGTTTGAAACGAAGAAGACATAGAATCAGATCTAAACAGGAGGCCATTCAGCAAGAGGTTGGCCCTGTTGATCGGGTCTTAGAGAGCAACTTAAATGACTCCATGCCTTCGAAAGAGTGTTCTCAACCTGTTTTGGGTGAGAAAACTTGTGAAGTTAGTGAAGGTGCACCCAATGCTGACAATGGTGATACTTCTCAAAATTTGAAGGCTGAGGTGCTTGGAATTATTGAAACTTCTAATGAGCTCGACCAGGAAAGGCCAATGGCTAATGGTACATCCTCAGTGCTTGCTGAATCTACATCGCCTGATTTAACTGAACCCAGAGGGGAGAAGCGTTCACATGATAGTGAGGATCTGGAGATTGATAACAAAAGGAGTCGGACTGTTATTATAGATAGTGATGATGAAGTGCATGTGGTGGAGGATAAATCTGCTTCTCATATTTGTGGTGAGACTAACATGGATGCACAATCCTTATTGCAAGTGAAGGAAGAAGCCGATTTTGAAAATGCTGATTCTCTTCCTCTCCGGAGTCCGAATGAGACCGAAGTTTCTGAGAATTTTCATTGCACTGCATGTACTAAAGTCGTGGGAGCCAGTGAAGTGCACCAGCATCCACTTTTGAAAGTCATCATTTGTGAAAATTGCAAGTGTGTGATAGAAGAGAAAATGCAGGAAAAGGACCCTGATTGCTCTGAGTGTTACTGTGGATGGTGTGGAAGGTGCAATGACCTAATTAGTTGTAAATCTTGTAAAATGTTATTCTGTATAAAATGTATAAAGTGGAATTTTGGTGAAGAACGCTTATCAGAAGTTCAAGCCTCTGGCTGGCATTGTTGTTGCTGTTCTCCAAATCTCCTGCAACTGTTAACTGTAGCATGTGAGAAGGCCCTTGGAGCTGGAAGTCTTTTGGTTTCTAGCTCCGACAGTGATTCAGATCTGTCAAACACTCAGATCAATGTTTCAATCAGCTCTAAGAAAAGACGGAAAAAGACGATTAGAAAGATCCTCGATGATGCCGAACTTGGAGAAGAAACCAAGCGAAAAATTGCAATTGAAAAGGCACGTCAAGAACATCTCAAGTCATTGCAAGTACAGTATGCTGCCAAATCATGGCCTATTAATACTGCAAGTTGTAATGGGAATGCACTAGACGGTGCCAGTGTTGAAGTGCTGGGTGATGCAACAAAAGGTTATATAGTGAATGTTGTGAGGGAGAAAGATGAGGAAGCAGTGAGGATTCCTCCCAGTATCTCGGCTAAATTAAAACCTCATCAGATTGCAGGGATACGATTTATGTGGGAAAATATCATACAGTCTGTCAGAAAGGTCAAATCTGGGGATAAAGGTCTTGGTTGCATACTAGCTCATACCATGGGCCTTGGTAAAACGTTTCAGGTCATAGCCTTTCTCTACACTGCTATGAGAAGTGTTGATTTAGGATTTAAAACTGCACTTATTGTTACACCTGTAAATGTCCTACACAATTGGCGGCAAGAGTTTGTGAAGTGGAGACCTCTAGAATTAAAGCGTCTTCATGTCTTTATGCTGGAAGATGTTTCAAGGGATAGAAGGGGAGATTTGCTTGCAAAGTGGAGATCTAAGGGGGGCATATTTTTGATTGGCTATGCTTCTTTTCGAAATTTGTCATTGGGAAAGCATGTTAAGGATAGACATGTGGCTAGAGAGATTTGTTATGCCCTGCAGGATGGACCTGATATATTAGTTTGTGATGAGGCCCATATGATCAAGAACACAAGGGCTGATATCACCCAAGCATTGAAGCAAGTGAAAAGCCAGAGAAGGATTGCATTAACAGGATCACCTCTACAAAACAATCTAATGGAATATTATTGTATGGTTGATTTTGTAAGAGAAGGATTTCTTGGCAGTAGCCATGAGTTTAGGAACAGGTTCCAAAATCCTATCGAGAATGGTCAACATACTAATTCTACATCAGTTGATGTAAAAATTATGAACCAAAGGTCACATATCCTCTATGAACAACTAAAAGGATTTGTCCAGCGGATGGACATGAATGTGGTGAAGAAGGACTTGCCCCCTAAAACTGTATATGTAATTGCTGTAAAGCTTTCGCCATTACAGAGGAAGTTATACAAAAGATTCCTTGATGTGCATGGATTCACAACTGACAAGGTCTCTGGTGAAAAAATAATAAAGAGGAGTTGCTTTTTTGCTGGATATCAAGCATTAGCTCAGATATGGAACCATCCCGGGCTCTTGCAAGTGGCCAAAGAACACAGAGACCACCTAAGACGTGAAGATGCTGTTGAAAATTTTCTCGTAGATGACAGCTCTAGTGATGATAACGTAGAGCGTGATATGCTAATTGGAGAAAAGCAGAGGACCAAGAATGATTTCACACATAAAAAAAGTGCTAATGGCTTTCTTCATGAGGGCTGGTGGCAGGATCTTCTTCGTGAAAAGAATTATAAAGACGTTGATTACAGTGGTAAAATGGTTTTGCTACTTGATATTCTATCTATGAGTGCTGCGGTGGGTGATAAGGCACTGGTTTTCAGCCAGAGCTTAACAACTCTAGATCTGATAGAGCTATATCTTTCAAAATTAACACGACAAGGGCGAGAAGGGAAATACTGGAAACAAGGAAAGGACTGGTACAGATTAGATGGAAGTACAGAGGGTTCTGAAAGACAAAAGCTGGTTGAAAGGTTTAATGAGCCCATAAATAAAAGGGTGAAATGCACTTTGATATCAACCCGAGCTGGATCTTTGGGAATCAACCTTCATGCTGCTAACCGTGTAATTATTGTTGATGGTTCATGGAATCCGACTTATGATCTTCAGGCTATATATCGAGTTTGGAGGTATGGCCAGAGGAAGCCAGTTTATGCTTACCGCTTGATGGCTCATGGAACAATGGAAGAAAAGATATATAAACGTCAGGTCACAAAGGAGGGTCTTGCTGCAAGGGTGGTGGATAAACAGCAAATACATAGAACTATGTCTAAAGAGGAGATGTTACATCTCTTTGATTTTGGTGATGATGAGTATTCAGATGTAGTGCAAGAGCTGGGCCAAGAGATCCGACCAACATGTCATCATGACATGACTGGTCAAGATGCCGCTTCACTGAAGCAGAAGTTGCCTCATGGAAGCTGCTCTTCTGACAAAATGATGGAAAGCTTACTTAGCAAACATTATCCACGGTGGATTGCAAATTACCATGAACATGAGACACTTTTGCAAGAGAATGAAGACGAGAAGCTGTCAAAAGAGGAGCAGGACATGGCCTGGGAAATATTCCGGCGTACTTTAGAGTGGGAGGAGGTGCAAAGAGTTTCTCTAGATGAATCATTGTTTGAGCGTAAGCCACCTGTTGGTAATGTTGCTCCTGCTGCACCAGAGAGCAGCAGCCTTGTACAATCCAGGGGCAGTTCAAGGAACCGCTTGGTGCAGCGGAAATGCACCAACCTTTCACACTTGCTGACCCTGAGAAGCCAGGGCACCAAAGCTGGTTGCAGTACCGTCTGTGGAGAATGTGCACAGGAAATCAGCTGGGAGAACCTTAATAGGGATGGCAAAACAGCAAGTTTGGCTTGCTGGTGTCTGATTGCTGCAGAAGAGTTGATTTGA | 4911 | 0.4178 | MYLKVANLENLTSNRSMQMIAFPKKKRKKKKKNKKEDMFGYREKGGISINVFESEQSLGCVWLGSSTVLVKDNLTGIQSTKVQKACLSNPRNLTGISYINETLNMNKMEEQQEEVENVESASSDSFIDDSDDDDPSMFEHDDESHLEAPLTDAEIEELIAEFLEVESKAAEAQESLEKESLAQVESEVRAELAENLHGDDLEMAVTTEMKTFIEEWEIKLDELETESAHLLEQLDGAGIDLPSLYKSIESEAPNGCSTEAWKKRTHWVGSQVTCDITESITDAEKYLQSQWPVRRKHGRLLEEGASGFLGKKLAKENSREAIEENSEKDWSSFNEIIQSHRFLEDDNSFGGKHWASVYLASTPQQAANMGLKLPGVDEVEEINDIEGNSSDPFYADAIANEKEIDLSEEQKKNFRKVKEEDDANIAWKLQLRLKRRRHRIRSKQEAIQQEVGPVDRVLESNLNDSMPSKECSQPVLGEKTCEVSEGAPNADNGDTSQNLKAEVLGIIETSNELDQERPMANGTSSVLAESTSPDLTEPRGEKRSHDSEDLEIDNKRSRTVIIDSDDEVHVVEDKSASHICGETNMDAQSLLQVKEEADFENADSLPLRSPNETEVSENFHCTACTKVVGASEVHQHPLLKVIICENCKCVIEEKMQEKDPDCSECYCGWCGRCNDLISCKSCKMLFCIKCIKWNFGEERLSEVQASGWHCCCCSPNLLQLLTVACEKALGAGSLLVSSSDSDSDLSNTQINVSISSKKRRKKTIRKILDDAELGEETKRKIAIEKARQEHLKSLQVQYAAKSWPINTASCNGNALDGASVEVLGDATKGYIVNVVREKDEEAVRIPPSISAKLKPHQIAGIRFMWENIIQSVRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVDLGFKTALIVTPVNVLHNWRQEFVKWRPLELKRLHVFMLEDVSRDRRGDLLAKWRSKGGIFLIGYASFRNLSLGKHVKDRHVAREICYALQDGPDILVCDEAHMIKNTRADITQALKQVKSQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSVDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVYVIAVKLSPLQRKLYKRFLDVHGFTTDKVSGEKIIKRSCFFAGYQALAQIWNHPGLLQVAKEHRDHLRREDAVENFLVDDSSSDDNVERDMLIGEKQRTKNDFTHKKSANGFLHEGWWQDLLREKNYKDVDYSGKMVLLLDILSMSAAVGDKALVFSQSLTTLDLIELYLSKLTRQGREGKYWKQGKDWYRLDGSTEGSERQKLVERFNEPINKRVKCTLISTRAGSLGINLHAANRVIIVDGSWNPTYDLQAIYRVWRYGQRKPVYAYRLMAHGTMEEKIYKRQVTKEGLAARVVDKQQIHRTMSKEEMLHLFDFGDDEYSDVVQELGQEIRPTCHHDMTGQDAASLKQKLPHGSCSSDKMMESLLSKHYPRWIANYHEHETLLQENEDEKLSKEEQDMAWEIFRRTLEWEEVQRVSLDESLFERKPPVGNVAPAAPESSSLVQSRGSSRNRLVQRKCTNLSHLLTLRSQGTKAGCSTVCGECAQEISWENLNRDGKTASLACWCLIAAEELI* | 1637 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Eupl12g00431 | 1636 | CDD | ADDz_ATRX | 617 | 715 | - | - | |
Eupl12g00431 | 1636 | Pfam | SNF2-related domain | 875 | 1178 | IPR000330 | GO:0005524|GO:0140658 | |
Eupl12g00431 | 1636 | SMART | ultradead3 | 849 | 1070 | IPR014001 | - | |
Eupl12g00431 | 1636 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 875 | 1058 | IPR014001 | - | |
Eupl12g00431 | 1636 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 839 | 1107 | IPR027417 | - | |
Eupl12g00431 | 1636 | Pfam | Helicase conserved C-terminal domain | 1260 | 1383 | IPR001650 | - | |
Eupl12g00431 | 1636 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1113 | 1450 | IPR027417 | - | |
Eupl12g00431 | 1636 | MobiDBLite | consensus disorder prediction | 535 | 554 | - | - | |
Eupl12g00431 | 1636 | MobiDBLite | consensus disorder prediction | 514 | 532 | - | - | |
Eupl12g00431 | 1636 | Gene3D | - | 1118 | 1462 | IPR027417 | - | |
Eupl12g00431 | 1636 | Coils | Coil | 1500 | 1520 | - | - | |
Eupl12g00431 | 1636 | CDD | SF2_C_SNF | 1251 | 1394 | - | - | |
Eupl12g00431 | 1636 | ProSiteProfiles | ADD domain profile. | 609 | 741 | IPR025766 | - | |
Eupl12g00431 | 1636 | Coils | Coil | 155 | 175 | - | - | |
Eupl12g00431 | 1636 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1263 | 1431 | IPR001650 | - | |
Eupl12g00431 | 1636 | PANTHER | RAD54-LIKE | 120 | 1621 | IPR044574 | GO:0016887 | |
Eupl12g00431 | 1636 | SMART | helicmild6 | 1286 | 1383 | IPR001650 | - | |
Eupl12g00431 | 1636 | MobiDBLite | consensus disorder prediction | 509 | 554 | - | - | |
Eupl12g00431 | 1636 | Gene3D | - | 824 | 1107 | IPR038718 | - | |
Eupl12g00431 | 1636 | Coils | Coil | 213 | 233 | - | - | |
Eupl12g00431 | 1636 | MobiDBLite | consensus disorder prediction | 111 | 149 | - | - | |
Eupl12g00431 | 1636 | MobiDBLite | consensus disorder prediction | 1552 | 1571 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Eupl12g00431 | Eupl-Chr12 | 16587709 | 16682969 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Eupl12g00431 | 863 | 1413 | RAD5 or RAD16-like Gene Family | AT1G02670 | 25.901 | 7.09e-24 | 107 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Eupl12g00431 | SNF2_N | 2.9e-51 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Eupl12g00431 | K10779 | - | nnu:104602758 | 2280.37 |