Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00430 ATGGAAGGTGGTTTGGGTTTAGTAGGTGGTGGTGGAGCTTCGTCGGGAGGCTCGACCAGCGGGTCGGTGTCTAAGGCGGAGGTGGTGGATCAAGACTACTACGTGGGGTTGTCATCTGAGGTGTCTTCGAACCACCCTGACTTAGCTGATTCTGAGCTTGAGTTGGGTCTTGGGTTGAGCCTTGGTGGTGCGATGAAGGTTAAACCCTCCGCATGGGGGGAGTACGGTAGGATTTTGACTGCTAAGGATTTCTCTTCTATGGTCTCTCGTGGGTCTTCTGCCTCTTCTTCTTCCTCTTCTGGCAGAGCTAATGCTTCTGCTACCACTGTTTCTGGGACAAAGAGGAACGCTGATTCTGTTGCTCAAGAGGTTGGACCTCCCAATGGAGCCAGTCAGGTTGTGGGATGGCCACCTATAAGGGCATATAGGATAAACAGCTTGGTTAACCAAGCCAAGGTTCCAACCTCTGCAAAAGGAGATGACATTGTCATTGAGAATGGTAAAAGTAACAATGAGTCGAAGAAGAAGACTAACACCATCAGCAGCTACAACAACAATGGTCATGTTAAGGAGAAAAGGCATGTAGGGAATTCTTTGTTTGTGAAGGTCAATATGGACGGCATGCCGATTGGGAGGAAGGTGGATCTGAGTGCTCAGGCCTGCTATGAGACCCTTGCTCAAACATTGGAGGACATGTTCCACGGACCCACAACCAACATCGATTCCATCCGCTCAAGTGGAGAGAAGGAACCTGGGGTTGAAACAACAAAACCCTCCAAACTGTTGGATGGCTCATCTGAGTTTGTGCTTACATACGAAGACAAAGAAGGAGATTGGATGCTTGTCGGAGATGTTCCTTGGGGGATGTTCCTTAACACTGTGAAGAGGCTTAGAATCATGAGGACATCTGAGGCGAATGGACTTGGTATGGACCCTATTATTTTTCAGCTCCAAGGATTGAAGACGGTGGTGAGAGACGAAGAAAGAAGCCTGTCTAGCATCATTGTTCATCTTCAGGTATGGAAGAAGAAGAAAACTCAGTCTGAAAGAGAAATCAAAGAAAAAGATACAGAGAAACTGAAGATTCAAAGCATTTTGCCAAGTAAAGATCATTCTCCCAGTCCCCATTTGTTTGCCTTTTTGGTGGTTTTAAACCATTCTCTGGGTACTCCAGCTTTTTTGTTCAAAGTCACACAAGTCTTAGTGTTATCAGTTTCTTGTGTAGTGTCATACATACATGCCTACTTACCTGAATGCTGA 1260 0.4635 MEGGLGLVGGGGASSGGSTSGSVSKAEVVDQDYYVGLSSEVSSNHPDLADSELELGLGLSLGGAMKVKPSAWGEYGRILTAKDFSSMVSRGSSASSSSSSGRANASATTVSGTKRNADSVAQEVGPPNGASQVVGWPPIRAYRINSLVNQAKVPTSAKGDDIVIENGKSNNESKKKTNTISSYNNNGHVKEKRHVGNSLFVKVNMDGMPIGRKVDLSAQACYETLAQTLEDMFHGPTTNIDSIRSSGEKEPGVETTKPSKLLDGSSEFVLTYEDKEGDWMLVGDVPWGMFLNTVKRLRIMRTSEANGLGMDPIIFQLQGLKTVVRDEERSLSSIIVHLQVWKKKKTQSEREIKEKDTEKLKIQSILPSKDHSPSPHLFAFLVVLNHSLGTPAFLFKVTQVLVLSVSCVVSYIHAYLPEC* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00430 419 FunFam Auxin-responsive protein 193 312 - -
Eupl12g00430 419 Coils Coil 338 358 - -
Eupl12g00430 419 MobiDBLite consensus disorder prediction 89 118 - -
Eupl12g00430 419 Pfam AUX/IAA family 88 309 IPR033389 -
Eupl12g00430 419 Gene3D - 193 313 - -
Eupl12g00430 419 MobiDBLite consensus disorder prediction 1 23 - -
Eupl12g00430 419 MobiDBLite consensus disorder prediction 162 189 - -
Eupl12g00430 419 ProSiteProfiles PB1 domain profile. 198 304 IPR000270 GO:0005515
Eupl12g00430 419 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 52 307 IPR003311 GO:0005634|GO:0006355
Eupl12g00430 419 MobiDBLite consensus disorder prediction 89 132 - -
Eupl12g00430 419 SUPERFAMILY CAD & PB1 domains 193 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00430 Eupl-Chr12 16565994 16569279 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00430 201 308 B3 DNA Binding Superfamily AT1G59750 33.333 1.04e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Eupl12g00430 AUX_IAA 2.5e-62 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00430 K14484 - nnu:104600977 359.762