Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00407 ATGGGTTCTATAGTCCCATTTCTAGACTTGAATCTACCCCCTGATCACACCATTTCTCCCAAAATCGAGCCCAAGCTCGAACCCCTCGATGTACAACAGCCCTACTTCTCAAATCCTAACCCTAACCCTTTCACTAACCCTAACCCTAATTCCGTGCAAGAACTTTTCCCGGTTCCGGAGATTACAGCCGAAGAAAACGATGTCTACTCAGAGTTCTTCCGAATATCTGAGCTTTTCCGGTCTGCTTTCGCCAAGAAAATGCAAAGTTACGGACAAGCAGAGGTTTTGAATCCGGATTCACGGTCAATCGTTCCTCAGGTGGCGGAGGAAACTAGGGTTTCTTCGGCTATCGTTGCGAAATCGAAGAAGCATCGGTCGGCTGAGATGGTTAGGGTTACGGATCTTGGAATTGAGGATCAGAGATACTTTAGGGATTTGGTGAGGAGGACAAGGATGCTTTATGAGTCTATGCGAATTTTCTTGCTTCAAGAAGAGGAAAGAGGGAGAAGTTTAGGGCTTGGGAAGAGAATGAGAGGGGATTTGAAAGCTGGGTCGATGATGAAAGATCGTGGTCTTTGGCTGAACCGAGAGAAGCGAATAATTGGTTCTATCCCTGGGGTTTACATCGGCGATATATTCTTTTTCCGGATGGAATTGTGTGTGATTGGATTGCACGGTATGGGTCAGGCCGGAATCGATTATGTCCCGGCTAGCCATAGTATGAATGGGGAGCCAATTGCGACGAGCATTATTGTGTCAGGTGGGTATGAGGATGATGAGGATGCTGGTGATGTGATCATCTATACTGGCCAGGGTGGCCAACAGAGGAATTCTGCTAAGCAAAGTGTTCACCAGAAGCTTGAAGGGGGCAATCTTGCCTTGGAGCGGAGCATGTTTTATGGAATTGAGATAAGGGTGATTCGAGGGATCAAACATGAGGGTGGCGGCCCTACGAGTAAGGTTTATGTTTACGATGGTCTTTATATGATTGTCGATTCTTGGTTTGACATTGGTAAGTCTGGTTTTGGTGTGTACAAGTATAAACTTGTGAGAATGGCTGACCAACCTGAAATGGGCAGTGCTGTTCTTAAGTTTGCTCAGAATTTGAGGACCAGTCCTTTGTCTGCTAGACCGTCTGGTTACTTGAGCCTTGATATTTCGAAGGGTAAGGAGAACTTTCCTGTTTCCCTATTTAATGACATTGATTCTGATAGAGAGCCGATGTTTTTTGAGTACCTTGTGAGGCCTGTGTACCCTCCTTTTGAATATCTGCAAATGAGTAATGGTATGGGCTGTGATTGTGTTTCTGCTTGTTCTGATGGTTGTCATTGTGCTCAGAAAAATGGGGGTGAGTATGCTTATGATCGCAATGGGATTCTCTTGAGAGGAAAGCCATTGATATTTGAATGTGGCAGATTCTGTCGCTGCCCTCCAAGTTGTTTGAACCGCGTGAGCCAAAAAGGGGTGAAGTATCGATTGGAAGTGTTCAGGTCGAGGGAAACAGGTTGGGGAGTTAGGTCCTTGGATTTGATTCCTGCTGGTGCTTTTATTTGTGAATACACTGGAGTGGCACTTACCAGGCAACAGGCAGCAGTATTTACCATGAATGGTGATACTTTGGTCTATCCAAATCGGTTTCCTGAGCGATGGGTGGAATGGGGAGACATATCTCAAGTTTTCCCTAATTTTTTACATCCTACACATCCCTCTATTCCTCCGGTGGATTTTGCGATGGATGTATCAAGAATGAGGAATGTTGCTTGCTATTTCAGTCATAGTTCAAGTCCTAATGTGCTGGTGCAATTTGTACTGTATGATCATCATAATGTATCATATCCTCATCTTATGCTCTTTGCAATGGAGAATATCCCACCTTTGAGAGAGCTTAGCCTTGATTACGGGGTGGCTGATGAATGGTCGGGAAAGCTCTCTATTTGCAACTAA 1944 0.4501 MGSIVPFLDLNLPPDHTISPKIEPKLEPLDVQQPYFSNPNPNPFTNPNPNSVQELFPVPEITAEENDVYSEFFRISELFRSAFAKKMQSYGQAEVLNPDSRSIVPQVAEETRVSSAIVAKSKKHRSAEMVRVTDLGIEDQRYFRDLVRRTRMLYESMRIFLLQEEERGRSLGLGKRMRGDLKAGSMMKDRGLWLNREKRIIGSIPGVYIGDIFFFRMELCVIGLHGMGQAGIDYVPASHSMNGEPIATSIIVSGGYEDDEDAGDVIIYTGQGGQQRNSAKQSVHQKLEGGNLALERSMFYGIEIRVIRGIKHEGGGPTSKVYVYDGLYMIVDSWFDIGKSGFGVYKYKLVRMADQPEMGSAVLKFAQNLRTSPLSARPSGYLSLDISKGKENFPVSLFNDIDSDREPMFFEYLVRPVYPPFEYLQMSNGMGCDCVSACSDGCHCAQKNGGEYAYDRNGILLRGKPLIFECGRFCRCPPSCLNRVSQKGVKYRLEVFRSRETGWGVRSLDLIPAGAFICEYTGVALTRQQAAVFTMNGDTLVYPNRFPERWVEWGDISQVFPNFLHPTHPSIPPVDFAMDVSRMRNVACYFSHSSSPNVLVQFVLYDHHNVSYPHLMLFAMENIPPLRELSLDYGVADEWSGKLSICN* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00407 647 Gene3D SET domain 360 647 IPR046341 -
Eupl12g00407 647 Gene3D - 199 359 IPR036987 -
Eupl12g00407 647 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 58 647 IPR025794 GO:0016571
Eupl12g00407 647 SMART preset_2 383 475 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Eupl12g00407 647 Pfam SAD/SRA domain 201 355 IPR003105 -
Eupl12g00407 647 ProSiteProfiles YDG domain profile. 202 351 IPR003105 -
Eupl12g00407 647 Pfam SET domain 502 634 IPR001214 GO:0005515
Eupl12g00407 647 SMART G9a_1 197 355 IPR003105 -
Eupl12g00407 647 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 109 635 - -
Eupl12g00407 647 SUPERFAMILY SET domain 375 646 IPR046341 -
Eupl12g00407 647 Pfam Pre-SET motif 386 483 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Eupl12g00407 647 ProSiteProfiles SET domain profile. 491 634 IPR001214 GO:0005515
Eupl12g00407 647 ProSiteProfiles Pre-SET domain profile. 430 488 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Eupl12g00407 647 SUPERFAMILY PUA domain-like 183 365 IPR015947 -
Eupl12g00407 647 SMART set_7 491 640 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00407 Eupl-Chr12 16052387 16054330 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00407 144 636 Su(var)3-9 homologs AT5G04940 42.200 7.87e-113 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Eupl12g00407 SAD_SRA 1.2e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00407 K11420 - mof:131151801 974.156