Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00402 ATGAAATGGGGTAGGGTTTCTAAGGATATAAATATGTACAAACATAACACAACAATGCCATGGAATTTGGAAGACAAGCTTACCTATAATCACAGAAAGCTTCTTTTATTTTTTTTTTGGTGGGGAGTGATGGGAGGACACTTGGGTTGGGGAATCCTTGATGAAGGATGGAGGAAGGGGCCCTGGACTTCTGAAGAGGATAAATTGCTTAGTGAGTATGTTGCTTTGCATGGGGAAGGAAGATGGAATTCTGTGGCTAGAGTTGTGGGGTTGAAAAGGAATGGGAAGAGTTGTAGGCTGAGGTGGGTGAATTATTTGAGGCCAGATCTCAAGAGAGGGAGAATAACCCCACATGAAGAGAATATCATTCTGGAGCTACATGCTAGATGGGGAAACAGGTGGTCAACAATTGCTCGGAGCTTGCCGGGGAGAACCGATAACGAGATCAAGAACTACTGGAGGACCCATTTCAAGAAAAACGGGAAAGTCTCATCGGAACACTCGGAAAAGTCGAAAAGTCGACTCTTAAGACGGCAACAATTTCAATTCCAACAAAAGCAGCATCAGCAACAATTGCAGCAGCAACAGCAACAACAACAACAACAAAACCAAATTGACATGAAAAAAATCATGTCTCTATTCGATGAGGGGGACAATAGAGTATCATCTCAAGCTCAAGTTAGGCAAGAGATGGTCTCTATGTACCCCAACACCTCTGAGGAGCAATGCTTACTATTATCTTCCATGTTTAATAGCGTCGACGCCTTTATGCCCGAGGTGTCCGGCGACGACATTCTATGGGGTGGCTTGTGGAACATGGATGACGTCCATGTCGACTTCGATGCCATGTATGCAACAAGTAGAGCTAGTGTGCAAACCCAAGTCGCTAGAGAAGGGTAG 900 0.4456 MKWGRVSKDINMYKHNTTMPWNLEDKLTYNHRKLLLFFFWWGVMGGHLGWGILDEGWRKGPWTSEEDKLLSEYVALHGEGRWNSVARVVGLKRNGKSCRLRWVNYLRPDLKRGRITPHEENIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKNGKVSSEHSEKSKSRLLRRQQFQFQQKQHQQQLQQQQQQQQQQNQIDMKKIMSLFDEGDNRVSSQAQVRQEMVSMYPNTSEEQCLLLSSMFNSVDAFMPEVSGDDILWGGLWNMDDVHVDFDAMYATSRASVQTQVAREG* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00402 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 161 IPR017930 -
Eupl12g00402 299 Gene3D - 116 160 - -
Eupl12g00402 299 Coils Coil 178 205 - -
Eupl12g00402 299 ProSiteProfiles Myb-like domain profile. 107 157 IPR001005 -
Eupl12g00402 299 CDD SANT 116 157 IPR001005 -
Eupl12g00402 299 FunFam MYB-related transcription factor 115 161 - -
Eupl12g00402 299 SMART sant 111 159 IPR001005 -
Eupl12g00402 299 SMART sant 58 108 IPR001005 -
Eupl12g00402 299 CDD SANT 61 106 IPR001005 -
Eupl12g00402 299 Gene3D - 59 111 - -
Eupl12g00402 299 ProSiteProfiles Myb-like domain profile. 54 106 IPR001005 -
Eupl12g00402 299 FunFam Myb transcription factor 59 111 - -
Eupl12g00402 299 SUPERFAMILY Homeodomain-like 56 153 IPR009057 -
Eupl12g00402 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 110 IPR017930 -
Eupl12g00402 299 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 56 232 IPR044676 GO:0003700|GO:0006355|GO:0043565
Eupl12g00402 299 Pfam Myb-like DNA-binding domain 59 106 IPR001005 -
Eupl12g00402 299 Pfam Myb-like DNA-binding domain 112 156 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00402 Eupl-Chr12 15933016 15935070 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00402 53 274 MYB Transcription Factor Family AT3G24310 58.898 1.31e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl12g00402 Myb_DNA-binding 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00402 K09422 - ming:122063950 351.673