Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00393 ATGGCCGCCAAGGACTCTTCTTCTCCACATTCACCTCCTCAACCTTCAAAGATGAAAAAATGGAAGAAAAAACTTCGACAAAAACCAAACGCAGACGTAGTAGAACGTTTGGAAGCATTGCCATGGAACCCATCTCTTTCAAATGACGACGACCCTTTCGCGCTTCTATCAGTGGGAGCAACCAACGACCTCGAAGGAGGTTTCTTCTCGCTCGAAGAGATAGACGAATTAGATTACGGTCTTGTCATTCCTGAAGGTGGCATTGAAGAGAAGATTGAGGAGAAGGAGAAGAAGAAGAAGAAGACGAAGAAGGCAAAGAAGAGGAAAGCTGTGCAAGGTTCCGAGGTGGGACCTGTGAATTCGTCTTGTATTTCTGTGGAAGAAGAGGACGCCAATGCCAACAAAGATGTTAAAGGAGAGACAGTTGTTGATGAAACTGAATTTTATGCGTGGAATGAATTGAGGCTCCATCCTTTGCTCATGAAATCGATATGCAGGCTTGGATTTAAGGAACCCACTCCGATACAGAAGGATTGTATTCCTGCTGCTGCCCATCGAGGAAAGGACGTCATTGGTGCTGCAGAAACGGGATCTGGGAAAACACTCGCTTTCGGGCTGCCCATTTTGCAACGTCTTCTTGAAGAACAAGAAAAAGCTGCAAATTTGCTCCCAGAGAAAGAAAATGCAGTGGAGAAAGGTGTTCGCGGAAGTCCTCTTCGCGCTCTTATTGTGACTCCTACAAGGGAGCTTGCACTCCAGGTCACTGATCATCTCAAGGAAGTAGCCAAATCCACCAATATCAGGGTGGTTCCCATTGTTGGTGGGATGTCAACAGAAAAGCAGGAGAGACTTTTAAAAGGAAGGCCTGAGATTATTGTAGGAACTCCGGGGAGGTTATGGGAGCTGATGTCAAGAGGAGATCACCACCTTGTTGAGTTACACTCATTGTCTTTCTTTGTGTTAGATGAGGCTGATCGAATGATAGAGAATGGTCATTTTCATGAGTTGCAGTCTATTATTGACATGCTTCCCATGACTAGTGGATCTGTTGAAGGGCGTTTCCAAAATACTCAGAATTGTGTAACAGTTTCAAACTTCCAGCAAAAGAAGAGGCAAACATTCGTGTTTTCTGCAACTATAGCACTATCTGCTGATTTCCGTAAAAAGCTAAAGCGTGGATCACTTACATCAAAACAATCCATGAATGATGGGATGAGTTCTATAGAAGCTCTTTCTGAGCGAGCTGGAATGAGAGCTGATGCTGCCATTTTTGATTTGACAAATTCTTCAATTGTAGCAAATAAACTTGAGGAATCATTTATTGAATGCGGTGAAGAGGATAAAGATGCCTATTTGTATTATCTTTTGAGTGTTCATGGACGAGGCCGCACAATTGTTTTCTGCACGTCAATTGCAGCTTTACGACATATTTCGTCACTTTTGCGCATCCTTGGCATCAATGTTTGGACTCTTCATGCTCAAATGCAACAGCGGGCACGCTTGAAGGCACTTGATCGTTTTCGTGGCAATGAACACGGTATACTTGTTGCTACTGATGTTGCAGCAAGAGGCCTTGATATTCCTGGTGTTCGAACTGTTGTTCACTATCAACTACCACATTCAGCCGAAGTTTATGTTCATAGAAGTGGAAGAACTGCTAGAGCCTCTGCTGATGGATGCTGCATCGCACTAATCTCTCCGAATGATAGATCAAAGTTCGCCTCTCTGTGCAAATCATTTTCAAAGGAAAGTCTTCAGCGATTTCCTTTAGATAACTCATACATGCCAGAGGTGATAAAACGATTATCTCTTGCACGTCAGATAGACAAGATTTCGCGGACTGACTCCCAGGAAAAGGCAAAGAAAAGCTGGTTGGAACGAAATGCTGAATCAGTGGAGTTGGTTGTAGAGGACAATAACAGCGAGGAAGAAAGAGTCAACACATATAAGCAAAAGAAAATCAGCTCTTTACATATGAAGCAGCTGCAGCAGGAGCTGAATATGTTGCTTTCACGTCCTTTGGAACCGAAAACATTTTCACATCGCTATTTGGCTGGGTCTGGTATTTCACCACTCCTTCAACACCAATTCGAAGAATTAGCTAAGCAGAAAGCAGGTGACAACAGGAGTGCAGGAGAAAGCAAAAGAAGGAAACTCTTGGTTATCGGTCAGGATTGCATTGAGCCACTCCAGGCACTTCGGAATGTTGGGCATGAGGTTTGCATGGATGTGAAAGAGATGACAGAAAAGCGAAGGAATGTACAGAATATAAGAAGAAAAAGGAAAGAAGAAAAAAAGCATTTGCGCGATCAACGGAGAAAAGAGAGGAAAAAATTGAAACAGAAAAGTGAATAG 2355 0.4327 MAAKDSSSPHSPPQPSKMKKWKKKLRQKPNADVVERLEALPWNPSLSNDDDPFALLSVGATNDLEGGFFSLEEIDELDYGLVIPEGGIEEKIEEKEKKKKKTKKAKKRKAVQGSEVGPVNSSCISVEEEDANANKDVKGETVVDETEFYAWNELRLHPLLMKSICRLGFKEPTPIQKDCIPAAAHRGKDVIGAAETGSGKTLAFGLPILQRLLEEQEKAANLLPEKENAVEKGVRGSPLRALIVTPTRELALQVTDHLKEVAKSTNIRVVPIVGGMSTEKQERLLKGRPEIIVGTPGRLWELMSRGDHHLVELHSLSFFVLDEADRMIENGHFHELQSIIDMLPMTSGSVEGRFQNTQNCVTVSNFQQKKRQTFVFSATIALSADFRKKLKRGSLTSKQSMNDGMSSIEALSERAGMRADAAIFDLTNSSIVANKLEESFIECGEEDKDAYLYYLLSVHGRGRTIVFCTSIAALRHISSLLRILGINVWTLHAQMQQRARLKALDRFRGNEHGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASADGCCIALISPNDRSKFASLCKSFSKESLQRFPLDNSYMPEVIKRLSLARQIDKISRTDSQEKAKKSWLERNAESVELVVEDNNSEEERVNTYKQKKISSLHMKQLQQELNMLLSRPLEPKTFSHRYLAGSGISPLLQHQFEELAKQKAGDNRSAGESKRRKLLVIGQDCIEPLQALRNVGHEVCMDVKEMTEKRRNVQNIRRKRKEEKKHLRDQRRKERKKLKQKSE* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00393 784 SMART helicmild6 475 556 IPR001650 -
Eupl12g00393 784 Pfam Helicase conserved C-terminal domain 447 555 IPR001650 -
Eupl12g00393 784 Gene3D - 427 669 IPR027417 -
Eupl12g00393 784 CDD SF2_C_DEAD 436 565 - -
Eupl12g00393 784 PANTHER RNA HELICASE 99 745 - -
Eupl12g00393 784 Pfam DEAD/DEAH box helicase 173 381 IPR011545 GO:0003676|GO:0005524
Eupl12g00393 784 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 320 328 IPR000629 -
Eupl12g00393 784 SMART ultradead3 168 400 IPR014001 -
Eupl12g00393 784 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 573 IPR027417 -
Eupl12g00393 784 Coils Coil 747 784 - -
Eupl12g00393 784 CDD DEADc_DDX24 160 425 - -
Eupl12g00393 784 Gene3D - 90 395 IPR027417 -
Eupl12g00393 784 MobiDBLite consensus disorder prediction 754 784 - -
Eupl12g00393 784 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 149 177 IPR014014 GO:0003724
Eupl12g00393 784 MobiDBLite consensus disorder prediction 1 28 - -
Eupl12g00393 784 Coils Coil 88 112 - -
Eupl12g00393 784 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 435 596 IPR001650 -
Eupl12g00393 784 Coils Coil 209 229 - -
Eupl12g00393 784 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 181 398 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00393 Eupl-Chr12 15391086 15426835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00393 150 599 Eukaryotic Initiation Factors Gene Family AT5G11200 26.458 9.98e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00393 K14805 - nnu:104602729 1087.79