Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00390 ATGGCTTCCCAGGGTCAGGTCATCACCTGCAAAGCTGCGGTGGCATGGGAACCCAACAAGCCACTGGTGATCGAAGACGTGCAGGTGGCTCCGCCGCAGGCTGGCGAGGTCCGAGTAAAGATATTATTCACTGCTCTCTGTCACACCGACGCTTATACCTGGAGTGGCAAGGATCCTGAGGGTCTCTTCCCGTGTATTCTTGGTCATGAGGCTGCTGGGATTGTCGAGAGTGTTGGTGAAGGAGTAACTGAAGTTCAACCAGGAGACCATGTTATTCCTTGTTACCAAGCAGAATGCAGGGAATGTAAGTTTTGTAAATCAGGAAAGACAAATCTCTGTGGCAAAGTCCGGGCAGCTACTGGAGTTGGTGTTATGATGAGTGATCGCAAGAGTCGTTTCTCGATAAATGGAACTCCTATCTATCATTTTATGGGAACCTCAACATTTAGTCAGTACACGGTTGTACATGATGTTAGCGTTGCAAAGATTGACCCCAAAGCACCTCTGGAAAAAGTATGCCTACTTGGTTGTGGTGTCCCTACAGGTCTTGGAGCAGTTTGGAACACAGCGAAGGTAGAATCAGGTTCCATTGTTGCTGTTTTTGGTCTTGGAACTGTTGGCCTCGCAGTTGCGGAGGGTGCAAAAGCAGCTGGTGCTTCACGCATAATTGGCATAGACATTGACAGCAAAAAGTTTGACAGGGCGAAGGATTTTGGAGTCACAGAATTTGTGAACCCGAAGGACCATGAGAAACCGATACAACAGGTCCTTGTTGACCTCACTGATGGCGGTGTTGATTACAGTTTTGAGTGCATAGGCAATGTCTCTGTGATGAGGGCTGCTTTGGAGTGCTGCCATAAGGGTTGGGGAACATCAGTTGTTGTGGGTGTTGCGGCATCAGGTCAGGAGATATCCACTCGCCCTTTTCAGCTGGTCACAGGACGTGTTTGGAAGGGAACGGCCTTTGGCGGTTTCAAGAGCCGTTCTCAAGTACCTTGGCTTGTCGACAAGTACATGAAGAAGGAAATCAAGGTCGACGAGTATATCACCCACACATTGACTCTTGAGGAGATCAACGAGGCTTTCCATCTGATGCATGGAGGAGATTGCCTCCGCTGCGTGCTTGAGGTGCACACTTGA 1140 0.4921 MASQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATGVGVMMSDRKSRFSINGTPIYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVPTGLGAVWNTAKVESGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDRAKDFGVTEFVNPKDHEKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVVVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYITHTLTLEEINEAFHLMHGGDCLRCVLEVHT* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00390 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 182 320 - -
Eupl12g00390 379 Gene3D - 13 372 - -
Eupl12g00390 379 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Eupl12g00390 379 PANTHER ALCOHOL DEHYDROGENASE 5 375 - -
Eupl12g00390 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
Eupl12g00390 379 SUPERFAMILY GroES-like 3 197 IPR011032 -
Eupl12g00390 379 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Eupl12g00390 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 13 201 - -
Eupl12g00390 379 Pfam Zinc-binding dehydrogenase 206 329 IPR013149 -
Eupl12g00390 379 NCBIfam S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 376 IPR014183 GO:0006069|GO:0008270|GO:0051903
Eupl12g00390 379 SUPERFAMILY GroES-like 326 375 IPR011032 -
Eupl12g00390 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Eupl12g00390 379 Gene3D - 182 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00390 Eupl-Chr12 15338589 15357446 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00390 10 331 Monolignol Biosynthesis Gene Families AT1G72680 27.829 3.70e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00390 K00121 - qsu:111990884 724.931