Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00356 ATGAAGTTTGGAGAGACGTTTACAGAGTATCTCAATGGGGAGCAGGAGTTGTTTCTGCAGAAATGCTCTCACGTGGAATACAAGCGGCTTAAGAAAGTTCTCAAGAGCTGTCGGAGTTGCCGGGTAGCTCAGGATTCTAGCAGCACAGGATCAGGAGAAGAGGAGAATGGTACATTGTCGCAGTTCTGCCATTGTGAATCCTGTCCAGTGTGTGATCAAAAGTTCTTTTCTGAGTTGATGAAAGAGGCTTCAGAGATAGCTGGATGTTTCAGTTCAAGAGTAAGACGCCTCCTCCATCTTCACATTTCCACCGGACTGCAGAGATACATGCTGTACGTGCGTCATTGTTTCACAAATAATCAGCAAGCCTTGGTTCAAGAAGGTCGGATGTTGATTGAATATGTTACAATGAATGCAACTGCCATACGGAAAATCCTTAAGAAATATGATAAAGTACATAGGTCTGTAAATGGAAGAAACTTTAAAACTAAGATGCAGGCTGAGCACATAGAACTTCTGCAATCACCTTGGCTAATAGAATTGGGCGCATTCTATATAAATTTCAATGGATCTGATGGTGGAGAGTCTGGCAAGTTTTTGCATCAGTTCTCTTGTGATTTCAGTGCTGCTCAGCCTGTAATGACGTTGAGGGTTTCAGATTCAATGAAGCTAGAGTATAATCTGACCTGTGCTATTTGCTTGGATATTGTTTTTAATCCTTATGCTTTGAGTTGTGGTCATCTTTTCTGCAAAGCCTGTGCTTGTTCTGCAGCTTCTGTGATGCTCTTCCAAGGCCTCAAGGCTGCACCTCCAGAATCAAAGTGTCCTATTTGTAGAGAGGTTGGAGTGTATGCTAATCCTGTGCAGATGTTGGAACTTGATTTGCTCTTGAAAAACAGGTTATTGAAAGAAACCAGAAATTCTCATTTCTTAGGAGAAATTTCATCCTTATTGACATTGAATCTTTCAGGTGCAAAGAGTACTGGAAAGAGAGGATGCATTCCGAACGTGCTATGA 1017 0.4179 MKFGETFTEYLNGEQELFLQKCSHVEYKRLKKVLKSCRSCRVAQDSSSTGSGEEENGTLSQFCHCESCPVCDQKFFSELMKEASEIAGCFSSRVRRLLHLHISTGLQRYMLYVRHCFTNNQQALVQEGRMLIEYVTMNATAIRKILKKYDKVHRSVNGRNFKTKMQAEHIELLQSPWLIELGAFYINFNGSDGGESGKFLHQFSCDFSAAQPVMTLRVSDSMKLEYNLTCAICLDIVFNPYALSCGHLFCKACACSAASVMLFQGLKAAPPESKCPICREVGVYANPVQMLELDLLLKNRLLKETRNSHFLGEISSLLTLNLSGAKSTGKRGCIPNVL* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00356 338 ProSiteProfiles Zinc finger RING-type profile. 230 279 IPR001841 -
Eupl12g00356 338 SMART ring_2 230 278 IPR001841 -
Eupl12g00356 338 SUPERFAMILY RING/U-box 222 282 - -
Eupl12g00356 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 328 IPR013083 -
Eupl12g00356 338 CDD SPX_BAH1-like 2 159 - -
Eupl12g00356 338 ProSiteProfiles SPX domain profile. 1 163 IPR004331 -
Eupl12g00356 338 CDD RING-HC_BAH1-like 220 292 - -
Eupl12g00356 338 ProSitePatterns Zinc finger RING-type signature. 245 254 IPR017907 -
Eupl12g00356 338 Pfam RING-type zinc-finger 230 254 IPR027370 -
Eupl12g00356 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 305 IPR033326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00356 Eupl-Chr12 13800786 13811551 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00356 230 337 C3H Transcription Factor Family AT2G42030 28.906 5.44e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00356 K16275 - psom:113314188 465.307