Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl12g00340 | ATGAATGACCTGATGACAAAGTCCTTCACCAGCTATGTGGATCTAAAGAAAGCGGCAATGAAAGATTTGGAAGCTGGTCCCGACCATGGCATGGAGATGTCAACCATTCAAATGGACCCTAATTTGGTCCAGTTCTTGGAGGAGGCTGAGAAGGTGAAGGATGACATAGGATCCATCAAAGACATATTGGGAAGGTTACAGGAAGCCAAGGAGGAGAGCAAATCTTTGCACAAGCCTGAAGCCGTGAAAGCCCTGCGCAATAGGATCAATGCTGACATTGTGAATGTGTTGAAGAAGGCCAAGATCATCAGGTCTTGCCTGGAGGACATGGACCGGGCCAACGCCGCCAATCGGAGGTTATCAGGATACAAGGAAGGGACTCCAATCGACCGAGCGAGGACATCTGTCACCAATGGTCTGCGAAAGAAGCTAAAGGAGCTGATGATGGATTTTCAGGGGCTGAGGCAGAAGATGATGGCCGAGTACAAGGAAACGGTGGGTAGGCGTTACTTCACTGTGACTGGAGAGCACCCAGAGGAGGAGGTGATTGAGAAGATCATCTCAAATGGGGAAGGGGGCGGAGAGGATTTCCTGCAGAGGGCGATACAAGAGCATGGAAGGGGGAAGGTGCTTGAGACAGTGGTGGAGATACAGGATTGGCATGCTGCAGCCAAGGAGATAGAGAAGAGCCTGCTAGAATTGCACCAGGTGTTCTTGGATATGGCGGTAATAGTGGAGGCACAGGGGGAGCAAATGGACGACATTGAGCACCACGTGATGAACGCTGCACATTATGTGAAGGATGGGACCAAGAATCTTAAGACAGCTAAGGATTACCAAAGGAGCAGCAGAAAGTGTATGTGTCTGGGGTTGATCCTGCTCCTCATCCTCATCCTTGTTATCGTCATCCCTATTGCAACCAGTTTCTAA | 930 | 0.4989 | MNDLMTKSFTSYVDLKKAAMKDLEAGPDHGMEMSTIQMDPNLVQFLEEAEKVKDDIGSIKDILGRLQEAKEESKSLHKPEAVKALRNRINADIVNVLKKAKIIRSCLEDMDRANAANRRLSGYKEGTPIDRARTSVTNGLRKKLKELMMDFQGLRQKMMAEYKETVGRRYFTVTGEHPEEEVIEKIISNGEGGGEDFLQRAIQEHGRGKVLETVVEIQDWHAAAKEIEKSLLELHQVFLDMAVIVEAQGEQMDDIEHHVMNAAHYVKDGTKNLKTAKDYQRSSRKCMCLGLILLLILILVIVIPIATSF* | 310 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl12g00340 | 309 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 214 | 276 | IPR000727 | - | |
| Eupl12g00340 | 309 | CDD | SynN | 42 | 201 | IPR006011 | GO:0016020 | |
| Eupl12g00340 | 309 | FunFam | Syntaxin 132 | 207 | 307 | - | - | |
| Eupl12g00340 | 309 | Pfam | Syntaxin | 44 | 249 | IPR006011 | GO:0016020 | |
| Eupl12g00340 | 309 | Gene3D | - | 210 | 309 | - | - | |
| Eupl12g00340 | 309 | SUPERFAMILY | t-snare proteins | 40 | 269 | IPR010989 | GO:0016020|GO:0016192 | |
| Eupl12g00340 | 309 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 39 | 169 | - | - | |
| Eupl12g00340 | 309 | Pfam | SNARE domain | 250 | 302 | IPR000727 | - | |
| Eupl12g00340 | 309 | PANTHER | SYNTAXIN | 54 | 299 | IPR045242 | - | |
| Eupl12g00340 | 309 | SMART | tSNARE_6 | 209 | 276 | IPR000727 | - | |
| Eupl12g00340 | 309 | SMART | SynN_4 | 37 | 163 | IPR006011 | GO:0016020 | |
| Eupl12g00340 | 309 | CDD | SNARE_syntaxin1-like | 213 | 275 | - | - | |
| Eupl12g00340 | 309 | Gene3D | - | 37 | 166 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Eupl12g00340 | Eupl-Chr12 | 13225300 | 13229009 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Eupl12g00340 | 1 | 288 | SNARE and Associated Proteins | AT1G08560 | 69.072 | 9.01e-143 | 403 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl12g00340 | K08486 | - | vvi:100254385 | 489.96 |