Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00338 ATGGTGAACGAGCTTCGAATTGTTGATTCTAACATCTGGAAGGCCTGCGCGGGAAGTTCAATTCAAATCCCGATTGTTGATTCTTGGGTTTACTACTTCCCCCAAGGTCACGCCGAGCGAGCCTTGTCTCCTCCAGATTTCTCCTCTACTATCTGTGTCAAACCCATGATTCTTTGTCGAGTCGACTCCATTCTTTTCCTCGCGAATCCTCACTCCGACGAGGTTTTTGCTAAGATCCGTCTCGAACCTTTTGATCGGTATCGTGCAGGGATCTTCCGTACCCCGCTGACTCTGGGAATTTCGAACAGGGAGAACAATGACGGCGAGGAGACGGTTCTTTCGTTCGCGAAGATCCTCACCTTGAGTGATACAGACAATAGTGGAGGATTCTCGGTCCCGAAGTTTTGCGCTAACTCGATCTTTCCGGCCCTGAATTTCAACGATACCCGGCCACAGCAGACGATTTCGGTGCGTGACGTTCATGGAGTGTTTTGGAATTTCTGCCACATCTACCGTGGTTCCCCTCTACGCCATCTCCTAACGACTGGATGGAGTAAGTTTGTGAAGCAGAAGAATCTCATCGCTGGGGATTCAGTGATTTTCATGAAGAATCGGACTGGTGACTTATCTGTGGGCATCCGACGGTCGACGAGGTCAAGCGTGACTGTGGACAGTCCACGGTGGCAGACTGCGCAAGCGGCGAAATTGGAACAGGAGTTGCGTAGAGGAGAGTCATGCTGGAGGAGTAACAGGGGTAGGGTTTCTGCTGAGTCAGTCAGGGAGGCTGCTGAACTAGCGGGAACCAATAGGCCTTTCGAGATTATCTATTATCCAAGGGCGGGATTACTGGACTTTATTGTGGAAGCACAGAGGGTTGAGGAATCATCGAGAAGGTCTTGGAAGGCTGGGATGATGGTCAAAATGTCAGTGCACACGGAGGACTCGTCTAGGGTGACGTGGTTCCAGGGGACAGTTTCTTCCGTTGCAGTTCCAGATCACGGGCCATGGTGTGACTCTCCCTGGCGCATGCTTCAGGTTATTTGGGATGAGCCTGAAGTTTTGCGGCATGTAAAGAGTGTGAGCCCTTGGCAACTTGAATTGGTCAGAGTTCCCCAGTATCCTGAGTTGCCGACTAATGGAGAAGGGAGCATGTTCTTTCCCATGTCGGGATTAACTAATTCAATGATGGGGCACTTGGAGGACCCTTCATTGTTCAGTTATACCACTTTTACTGCTGGCATGCAGGGAGCCAGGCAAGATTCCACTTTTCCTGCTGGCATGCAGGTAGCTAATAGTACCCATCACATGTACTCTGAACATCTAGATGGAAACATGGCACCAAAGTTGAGTTCAGTGTCTACTGAACTGACCATTGGGAGTACAGCACAAGCCGACAACTCATTGAAGCATAGCCGGGGGAGTAGCACAGAGCTTCCTGCCAGCCGAACCACTAACTCAATGACCAAAGCTGGTGGTGGTTCCTTTCGGTTATTTGGTTTTAACATGTGGAGGGCAGCTGAAGGGGAACCGGCAGAATTTGTTTTGGTTCAAGATATTATCATCGTTTGA 1569 0.4997 MVNELRIVDSNIWKACAGSSIQIPIVDSWVYYFPQGHAERALSPPDFSSTICVKPMILCRVDSILFLANPHSDEVFAKIRLEPFDRYRAGIFRTPLTLGISNRENNDGEETVLSFAKILTLSDTDNSGGFSVPKFCANSIFPALNFNDTRPQQTISVRDVHGVFWNFCHIYRGSPLRHLLTTGWSKFVKQKNLIAGDSVIFMKNRTGDLSVGIRRSTRSSVTVDSPRWQTAQAAKLEQELRRGESCWRSNRGRVSAESVREAAELAGTNRPFEIIYYPRAGLLDFIVEAQRVEESSRRSWKAGMMVKMSVHTEDSSRVTWFQGTVSSVAVPDHGPWCDSPWRMLQVIWDEPEVLRHVKSVSPWQLELVRVPQYPELPTNGEGSMFFPMSGLTNSMMGHLEDPSLFSYTTFTAGMQGARQDSTFPAGMQVANSTHHMYSEHLDGNMAPKLSSVSTELTIGSTAQADNSLKHSRGSSTELPASRTTNSMTKAGGGSFRLFGFNMWRAAEGEPAEFVLVQDIIIV* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00338 522 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 502 IPR044835 GO:0003677|GO:0006355|GO:0009725
Eupl12g00338 522 MobiDBLite consensus disorder prediction 462 486 - -
Eupl12g00338 522 Gene3D - 300 372 - -
Eupl12g00338 522 FunFam Auxin response factor 113 217 - -
Eupl12g00338 522 Pfam Auxin response factor 262 345 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Eupl12g00338 522 SMART B3_2 115 217 IPR003340 GO:0003677
Eupl12g00338 522 CDD B3_DNA 114 215 IPR003340 GO:0003677
Eupl12g00338 522 SUPERFAMILY DNA-binding pseudobarrel domain 112 220 IPR015300 -
Eupl12g00338 522 Gene3D - 112 217 IPR015300 -
Eupl12g00338 522 Pfam B3 DNA binding domain 115 216 IPR003340 GO:0003677
Eupl12g00338 522 ProSiteProfiles B3 DNA-binding domain profile. 115 217 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00338 Eupl-Chr12 13172453 13174423 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00338 6 518 B3 DNA Binding Superfamily AT1G77850 40.000 7.45e-120 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Eupl12g00338 B3 1.5e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00338 - - nnu:104612061 577.785