Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00319 ATGGCACAGAGTAACTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGTTGAAAAGAAATTTGCATGCTTCGGCAAAGGCCTTCATGACCGAAGGAAAAGTCGCTGCAGATCCAGTAGCAATCGATGCTCCTGGAGGCTTTCTCTTTGAATGGTGGTCCGTCTTTTGGGACATCTTCATCGCGAGGACAAATGAGAAACATTCTGACGTTGCTGCTGCTTATATTGAGGTACAACAAGTCAAGGCAAGGGAGCACCAACAACAGCTGCAAATGCAGCAATTGCAACTCATGCAGCAACGACACGCTCAATTGCAACGGAGGGATGCTAATCATCCTTCCATTGGTGGTCCCATAAATGCTATAAACTCTGATGGGATGCTGGGGCAGTCTAGGGCCAGTGTTTTGGCAGCAAAAATGTACGAAGAACGCATGAAACATTCACACACAATGGATTCTGAGACATCCCCGCAACTTATTGATGCTAGTAGAATGTCCCTTTTGAAATCAGTAACCAATCATCCCGGCCAGTTGGTCCAAGCTAATCCAGGAAGTCTGTCTACGACATTGCAGCAAATTCAGGCACGAACTCAACAGACGACTGACATCAAGGGTGACTTGGCTGTAACTCAAAGATCATTGCCTATGGATCCTTCATCAATTTACGGACATGGGATTATGCAATCAAAATCTGGATTAGGCAGTGCAGGATTGAACCAAGGTGTCAGTGGTCTTCCATTGAAGGGTTGGCCTTTAACTGGCATTGACCAACTACGCCCGAGTTTAGGTTCACAAGTCCAGAAACCTTTACTGCAGACCCCAAATCAGTTTCAACTATTAACGCCACAACAACAACAACAGCTCATAGTGCAGGCTCAGGCACAAGGCAGCCTCAGTAGTTCACCCAACTACGGAGATATGGATCCTCGGAGATTTAGGGTTTTACCTAGGGGTAACTTGAATGCAAAAGATGGTCAACCTACAGGAAATGATGGTGGATCTATTGGTTCCCCAATGCAATCAAATTCACCAAAGGTTAGAGTACCTTCCCAAGATCAAGCAGAATATCTCATGAAGATGAAGATGGTTCAAATGCAACATTCTTCCCCTCAGCAACAACCAGACCAGCTACAGCAGCAGCAACTGCAACAGAATAGCAGAAAACGGAAACATCCTTCTTCTTCTGGAGCTGCTAACAGTACCGGTACAGGAAATACAGCGGGTCCTTTGCCCAATTCTCCCCCATCAACTCCGTCGATTCATACACCTGGTGATGGAGTGACTATGGTGGGTGGTTTGCAGCATGTGAACAGTATGCCCAAAAACTTAATGATGTATGGTCCAGATGGAGCAGGTGGTCTTGCATCATCTTCAAATCAGCTGGAAGACATGGAACGTTTTGGAGACGTTGGTTCCTTGGATGATAATGTGGAATCTTTTCTCTCACATGATGATGGTGATGGAAGGGACCTTTTTGGCACATTAAAACAAAGTCCTACTGAGCACAATACAGAGTCTTCGAAGGGTTTTACATTCAGTGAAGTTGGTTGTATTCGTACAATCAATAGCAAAGTTGTCTGCTGTCAGTTTTCAACAGATGGGAAGTTGTTGGCTAGTGCTGGGTATGAGAAGAAGGCTGTTCTTTGGAATATGGACACGCTGCAGACAGAGAGCACTCCAGCAGAACACTCTCTTAAAATTACAGATGTTTGTTTTAGACCGAATTCAACTCAACTGGCAACATCTTCACATGATAGAACCGTGCGACTGTGGAATGCAGCAGAACCGACTTATTGTTTACATACATATACTGGGCACAATTCACCTGTGATGTCACTAGATTTCCACCCTAAGAAGACCGACTTGTTCTGTTCTTGCGATGGTGACGGTGAAATTCGCTTTTGGAATATCAGCCAGTATCCAAGTACTCGTGTTTCCAAGGGAGGTACAGCACAAGTGCGATTTCAGCCAAGAATTGGACATCTACTGGCAGCAGCAGCTGAGAACGTGGTGTCCATCTTTGATGTTGAGACTGACCGGTCGACACACTCGTTACAGGGGCATACCAAAGAGGTACGCTCTGTTTGCTGGGACGCGAATGGAGATTATTTGGCGTCTGTCAGTCAGGACTCTGTGAGGGTGTGGTCATTGGCCTCGGGAGAGTGCATTCACGAGCTCAGCTCCAATGGGAACGAGTTCCATTCTTGCGTTTTTCATCCAAGTTATTCTACCCTTTTGGTGATTGGTGGATACCAGTCATTGGAGTTGTGGAACATGGCAGAGAATAAGAGCATGACGGTTCCAGCACATGAGGGTCTGATTGTGGCTCTAGCACACTCACCCATCACGGGGATGATTGCCTCTGCGAGCCATGACAAATCTGTTAAGTTATGGAAATAA 2409 0.4558 MAQSNWEADKMLDVYIYDYLLKRNLHASAKAFMTEGKVAADPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSDVAAAYIEVQQVKAREHQQQLQMQQLQLMQQRHAQLQRRDANHPSIGGPINAINSDGMLGQSRASVLAAKMYEERMKHSHTMDSETSPQLIDASRMSLLKSVTNHPGQLVQANPGSLSTTLQQIQARTQQTTDIKGDLAVTQRSLPMDPSSIYGHGIMQSKSGLGSAGLNQGVSGLPLKGWPLTGIDQLRPSLGSQVQKPLLQTPNQFQLLTPQQQQQLIVQAQAQGSLSSSPNYGDMDPRRFRVLPRGNLNAKDGQPTGNDGGSIGSPMQSNSPKVRVPSQDQAEYLMKMKMVQMQHSSPQQQPDQLQQQQLQQNSRKRKHPSSSGAANSTGTGNTAGPLPNSPPSTPSIHTPGDGVTMVGGLQHVNSMPKNLMMYGPDGAGGLASSSNQLEDMERFGDVGSLDDNVESFLSHDDGDGRDLFGTLKQSPTEHNTESSKGFTFSEVGCIRTINSKVVCCQFSTDGKLLASAGYEKKAVLWNMDTLQTESTPAEHSLKITDVCFRPNSTQLATSSHDRTVRLWNAAEPTYCLHTYTGHNSPVMSLDFHPKKTDLFCSCDGDGEIRFWNISQYPSTRVSKGGTAQVRFQPRIGHLLAAAAENVVSIFDVETDRSTHSLQGHTKEVRSVCWDANGDYLASVSQDSVRVWSLASGECIHELSSNGNEFHSCVFHPSYSTLLVIGGYQSLELWNMAENKSMTVPAHEGLIVALAHSPITGMIASASHDKSVKLWK* 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00319 802 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Eupl12g00319 802 MobiDBLite consensus disorder prediction 367 413 - -
Eupl12g00319 802 Pfam LisH 10 36 IPR006594 GO:0005515
Eupl12g00319 802 Gene3D - 647 802 IPR015943 GO:0005515
Eupl12g00319 802 ProSiteProfiles Trp-Asp (WD) repeats profile. 770 802 IPR001680 GO:0005515
Eupl12g00319 802 Pfam WD domain, G-beta repeat 685 719 IPR001680 GO:0005515
Eupl12g00319 802 Pfam WD domain, G-beta repeat 565 595 IPR001680 GO:0005515
Eupl12g00319 802 Pfam WD domain, G-beta repeat 526 553 IPR001680 GO:0005515
Eupl12g00319 802 Pfam WD domain, G-beta repeat 602 639 IPR001680 GO:0005515
Eupl12g00319 802 Pfam WD domain, G-beta repeat 781 802 IPR001680 GO:0005515
Eupl12g00319 802 ProSiteProfiles Trp-Asp (WD) repeats profile. 563 595 IPR001680 GO:0005515
Eupl12g00319 802 Gene3D - 482 646 IPR015943 GO:0005515
Eupl12g00319 802 ProSiteProfiles Trp-Asp (WD) repeats profile. 606 648 IPR001680 GO:0005515
Eupl12g00319 802 ProSiteProfiles Trp-Asp (WD) repeats profile. 521 562 IPR001680 GO:0005515
Eupl12g00319 802 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 770 802 - -
Eupl12g00319 802 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 563 595 - -
Eupl12g00319 802 SUPERFAMILY WD40 repeat-like 517 802 IPR036322 GO:0005515
Eupl12g00319 802 MobiDBLite consensus disorder prediction 367 436 - -
Eupl12g00319 802 ProSiteProfiles Trp-Asp (WD) repeats profile. 688 728 IPR001680 GO:0005515
Eupl12g00319 802 MobiDBLite consensus disorder prediction 296 315 - -
Eupl12g00319 802 CDD WD40 520 802 - -
Eupl12g00319 802 SMART WD40_4 722 761 IPR001680 GO:0005515
Eupl12g00319 802 SMART WD40_4 763 802 IPR001680 GO:0005515
Eupl12g00319 802 SMART WD40_4 681 719 IPR001680 GO:0005515
Eupl12g00319 802 SMART WD40_4 514 553 IPR001680 GO:0005515
Eupl12g00319 802 SMART WD40_4 599 639 IPR001680 GO:0005515
Eupl12g00319 802 SMART WD40_4 556 595 IPR001680 GO:0005515
Eupl12g00319 802 SMART WD40_4 642 678 IPR001680 GO:0005515
Eupl12g00319 802 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 606 641 - -
Eupl12g00319 802 MobiDBLite consensus disorder prediction 326 352 - -
Eupl12g00319 802 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 802 IPR044716 GO:0003714
Eupl12g00319 802 MobiDBLite consensus disorder prediction 320 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00319 Eupl-Chr12 12528216 12567997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00319 539 762 U-box Gene Family AT2G33340 30.126 1.81e-19 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Eupl12g00319 WD40 0.015 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00319 - - tss:122655025 1306.58