Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00302 ATGTCGGTTTCTCCGAGGTGGTTTTCTCTGTGTTTGTTCCTTCTGTTGCTAATTGTTGGAGTAATGGCGGGAGTAGGAAGAGAGGAGATCTCGGATTCGAGGGTTGGAGAAACAGAGCAGCTGCAGAGCTCAAAGAACTCAACAATGGCGGAGAGGTCGGACGAAGGTGAAGGCTGGAATGAGCACGCCGTCGAGGATCCGGAGGAGGTGGCTTCCATGGTTGAGATGAGCATACGAAACAGCACCGAAAGGAGGAACTTGGGCTTTCTATCTTGTGGCACCGGCAACCCCATTGACGACTGCTGGCGCTGCGATCCCCACTGGCAGCTACATCGCAAGCGCCTTGCTGACTGTGGCATTGGTTTTGGACGCAATGCCATTGGTGGCCGTGACGGTCGTTACTATGTTGTCACCGACTCTAGTGACCATGACCCTGTCAACCCCCGACCTGGCACATTGCGCCATGCTGTCATTCAAGACAGACCTCTGTGGATCGTGTTCAAGAGGGACATGGGGATCACTCTTAAGCAGGAGCTAATCATGAACAGCTTCAAGACCATCGACGCCCGTGGTGTCAATGTCCACATTGCCAATGGGGGGTGCATCACCATCCAGTTCATCACTAACGTCATCATTCATGGCCTTCATATCCATGACTGCAAGCCCACTGGAAATGCCATGGTGCGCAGCTCCCCATCTCACTATGGGTGGAGGACAATGGCTGACGGTGACGCTATCTCAATCTTCGGATCCAGCCACATCTGGGTTGATCATAACTCCCTCTCCAACTGTGCAGATGGTCTTGTTGATGCTGTCATGGGTTCGACAGCCATCACCATCTCCAACAACTACTTTACACACCACAATGAGGTGATGCTGCTGGGTCACAGTGATTCTTACACAAGAGACAAGCAGATGCAAGTGACCATTGCTTACAACCATTTTGGTGAAGGTCTCATTCAGAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCTATTGGTGGAAGTGCAAACCCTACCATCAACAGCCAAGGCAACAGATACCTTGCTCCTTCCAACCCTTTTGCCAAGGAGGTGACGAAGAGAGTGGTAACCAATGTGGGTGTGTGGAAGAACTGGAACTGGAGATCAGAGGGGGACCTGCTGCTGAATGGAGCCTACTTCACGCCGTCTGGAGCCGGAGCCTCAGCCAGTTATGCAAGGGCATCAAGTCTTGGTGCCAAGTCCTCATCCATGGTGGCCTCTATTACTTCTGGTGCTGGTGTTCTCGGCTGCCGCAGGGGTCATCAATGCTAA 1335 0.5199 MSVSPRWFSLCLFLLLLIVGVMAGVGREEISDSRVGETEQLQSSKNSTMAERSDEGEGWNEHAVEDPEEVASMVEMSIRNSTERRNLGFLSCGTGNPIDDCWRCDPHWQLHRKRLADCGIGFGRNAIGGRDGRYYVVTDSSDHDPVNPRPGTLRHAVIQDRPLWIVFKRDMGITLKQELIMNSFKTIDARGVNVHIANGGCITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPSNPFAKEVTKRVVTNVGVWKNWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVASITSGAGVLGCRRGHQC* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00302 444 FunFam Pectate lyase 95 437 - -
Eupl12g00302 444 Gene3D - 95 437 IPR012334 -
Eupl12g00302 444 PANTHER PECTATE LYASE 18-RELATED 65 442 IPR045032 GO:0030570
Eupl12g00302 444 PRINTS Pollen allergen Amb family signature 142 167 IPR018082 -
Eupl12g00302 444 PRINTS Pollen allergen Amb family signature 178 194 IPR018082 -
Eupl12g00302 444 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Eupl12g00302 444 PRINTS Pollen allergen Amb family signature 242 263 IPR018082 -
Eupl12g00302 444 PRINTS Pollen allergen Amb family signature 118 135 IPR018082 -
Eupl12g00302 444 PRINTS Pollen allergen Amb family signature 344 363 IPR018082 -
Eupl12g00302 444 PRINTS Pollen allergen Amb family signature 415 438 IPR018082 -
Eupl12g00302 444 PRINTS Pollen allergen Amb family signature 386 410 IPR018082 -
Eupl12g00302 444 SUPERFAMILY Pectin lyase-like 72 438 IPR011050 -
Eupl12g00302 444 SMART amb_all 170 367 IPR002022 -
Eupl12g00302 444 Pfam Pectate lyase 182 359 IPR002022 -
Eupl12g00302 444 MobiDBLite consensus disorder prediction 32 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00302 Eupl-Chr12 11969592 11976167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00302 29 444 Polysaccharide Lyase AT4G13710 79.858 0.0 700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00302 K01728 - nnu:104587909 819.69