Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00300 ATGGCCATGGTATGCTTCTCCATCTTTGTTACACCCATCACGGAATTAGGAAAGTGTTTCTTTGTTCCTCTTAAGCGCCAGCTCTTTTATCTTCTCAACTATGAGAGCAACCTTGATAACCTTCGGAACCAAGTGACTTATCTGAGTCGAAAGAGAAATGACGTCCAAAACTCGATAGATGAGGCTCGAAGGAGATTGGAACAACCCACCGAAGAAGTGCAAGAATGGTTGAGAAGGGCAGACAGCGTTGAAGCTGATGTGAGGAGACTGGATGAAGATGCTAGTCTGAACAAGAGATGTCTCAAGGGATTGTGTCCAGATTGGAGCTCACGTCGCCGGCTAAGTAAACAAGCAATGGAGAAGTTACCTGTAGTCAAAGAACTACGAGAAGAAGGGAATTTTAGTACAGTTTCTCATGCTCCGCCTCCTCCGAGTGTTGAACGGGTGCGAACTGATTGTGTTGAGAACTTTGCATCCAGAGAGTTGGTTATGGATCAAGTCATGCAAGCATTACGAGATGAGAATATCAGATCCATCGGGGTCCATGGAATGGGTGGTGTAGGGAAAACGACCCTCGTGAAAAGAGTAAACAATAAACTCCAAGAAACCCAACTCTTCAAGAAAGTTATAATGGTGACCGTGTCCAGCAACCCAAACTTGAAGAAAATCCAAGATGAAATTGCCGAGAGGCTAGAGTTGGAGTTTAAGCCTGGGAGTACAGCACTCATAAGATCTAATAGATTGTTTGAGAGGTTGAAGGAGGAGGAGACGGTCGTTATAATATTGGACGATGTGTGGAAGAGGTTAGATGTGGCCGAAATAGGGATTCCCACTGGAACTGAGCACATCAATTGCAAAGTCATAATCACGACGCGAATACTTGATGTTTGCCGTGAAATGGGGATTCAAACTGTAACTAAAGTGGAACTCCTCTCTGAAGAGGAATCGTGGAATCTATTCAAAACAAAAGCAGGTGATGTTGTTACATTGCACAAAAGATTGCAACCCATTGCAGAAGAGATTGCAAGAAAATGTAAGGGCTCGCCATTGGCAATTGTTACGCTTGGATCGTCGTTGAGAGAAGTGGAGGATGAATTTGAATGGCGTAATGCGTTAAGGGCATTGGGAAGTCTTGAGCCAATCGAAATAGAAGGTATTATACCAGAAGTGATCACATCTCTGAGATTTAGTTATGACCATTTGAATGGGTCAGAAATCAAGCTCTTCTTCTTGTTCTGTTGCTTGTTCCCTGAAGACTATGATATTTCTCTATATGCTTTGAGAAATTATGGAATAGGGGAAAGGTTCCTGAAGGTGAATGGGACTTTGGAGGATGCATGGAACAAACTACTTTCTTATGTTAAAAAACTTAAGAATTCTTGCTTACTATTAGATGGTTGTAATGAATGGTATGTCCGAATGCACGATGTTGTCCGCGACGTTGCCCTATCAATTGCGTCAGAAGATGAGAATGGGTTTTTGGTAAAAGCAGGTGTAGATCTGACAAAGTTGACTGAGAGAGTGAATCTCCATAGATATAAGCGGATTTCAATTATGAGCAGCGTGGGTATTGAGCTCCCTACTCCATTGGAATGCCCACAACTCCTAACACTGTCATTAAGTGGAGCAAAGGATCTAAAAATAAATCCAGATAATTTCTTTGAAGGGATGAAAGCTCTCGTCGTCCTAGATCTATTCGACACTAACGTTACCTCAATTCCGCAGTCAATTGTACACCTCACAAATCTCCGGACTCTACATCTAAGTGCTTGTGATCTATCAACCAACATATCCATACTTGGGGGATTGAAGAATCTAGAAATACTTGATTTGTATAATTCAAATATCGTGACGTTGCCAGAAGAAATTGGTAATCTGACCAATCTAAAGTGCTTGAATTTGACGAAGGCAGATATTTCAATTGTAACCCCGAATGTTATGTCAAGGCTGTCTAAGTTAGAAGAATTATACATGGAAGATAGCTTTCATGATTGGGACACGGTCACAGAGGAAGGCGAATACAATGCTAGCTTTGCGGAGGTAGCATCATTATCTCATCTGGCCACTCTAAAAATTGATATAGAGGGTGAGAAATGTACATCCCAAGACATCCCTTGTTCGTGGAAAAATCTAAAACAATTCCAAGTAAGAGTTACATGTACATCCATCAAATGGTACACCTTGGGACCCAACAATGGCTTGCACCTCGATGGAGTTAATCTGATTAAGCATTGGGTTAAGGTGTTATTCAAGAGAACCCAATGTTTATGCTTATCATCCTGCTATGGTTTCAACAATGTTGTAGACTTAGATGTAGCAGGGGTTTTTAAGCATTTGGAATATCTTCTGGTTTTCAGTTGTCGGGAGGTGGAATATCTCATAAGCATTGAAGAAGAAGAATCTCCTCAAGAATCATTTGGGGCTTTGAAGACATTAACCATCCAAGGAATGGACAATATGAAGAAAATCTTCCATGGCCTACCACCAGTTAGACTCTTTGGACAATTGAAATTCCTAAATGTGGATGACTGTCCCAACTTAATCAACATCTTTTCATCTGATCTACTGCAAAATCTAGAAAATCTTGAAGACCTCAATGTACGGAACTGTGATGTGCTGCAGGAGGTATTTAACACTGAAGGGTTTGTTGAATCTGAAGGGAATCATGCCATGCCTATGCTTTCACGGTTAAGGAATATCACCTTATATAAGCTAAAGAATTTGAAGAGTATCTGGAAGGGGGTCCTACCAACCGGAAGCCTTCAAAACCTTAAAACACTAGAAGTGACCAAATGCAGTGGCTTAAAATATCTCTTCCCATCCTCTATGGGACTTCAACAACTGGAGCGGCTTGAGATTTCGTCTTGTCATGAGGTGGAGAAGATACTATCCAACAGAGAGGAGGAGGAGCATGTGCTGGGCACAGAAGAGACTTCATCCTCAAGACAAATGCAATTGCCTACGAGGAGGAACTTCTTGAATTTAGAATCACCCAAAACCTTTCAAAACCTTCAAAAACTAAGAATCAATGGTTGTCGGAGATCGAAGAATCTTTTCTCATTCAGTTTAGCACAAGGTTTCCAGCAATTAGAAACACTTTGTGTATCTGATTGTTACGAAATGGAAGAAATAATTGCAAAAGAGGATGGGCACGATGAAGGAGTGGCTCAAGGTTTGCTACCTCGATTAAGACATCTTGAACTGGAAGACCTATACGATCTAATGAGCATCTACCGTGGAAGTTTACTTCTCGATTGTCTGGAAGATATTAAAGTAGTTCGGTGTCCAAAGTTGAAGAGACTTCCTCTTGGACCAAAAGGTGCATCCAACAACTTGGTAGAAATTATCGGAGAACAAGAATGGTTTGAAGGATTGGAATGGGAAGATGAAAACGTCAAGGCATGCCTCCAACCTTTATTTCAAGCGATCGGAACGGAACCTATACTAATGGTGAGCACATTGCTGAAAAGCGTACATCTATAA 3483 0.4131 MAMVCFSIFVTPITELGKCFFVPLKRQLFYLLNYESNLDNLRNQVTYLSRKRNDVQNSIDEARRRLEQPTEEVQEWLRRADSVEADVRRLDEDASLNKRCLKGLCPDWSSRRRLSKQAMEKLPVVKELREEGNFSTVSHAPPPPSVERVRTDCVENFASRELVMDQVMQALRDENIRSIGVHGMGGVGKTTLVKRVNNKLQETQLFKKVIMVTVSSNPNLKKIQDEIAERLELEFKPGSTALIRSNRLFERLKEEETVVIILDDVWKRLDVAEIGIPTGTEHINCKVIITTRILDVCREMGIQTVTKVELLSEEESWNLFKTKAGDVVTLHKRLQPIAEEIARKCKGSPLAIVTLGSSLREVEDEFEWRNALRALGSLEPIEIEGIIPEVITSLRFSYDHLNGSEIKLFFLFCCLFPEDYDISLYALRNYGIGERFLKVNGTLEDAWNKLLSYVKKLKNSCLLLDGCNEWYVRMHDVVRDVALSIASEDENGFLVKAGVDLTKLTERVNLHRYKRISIMSSVGIELPTPLECPQLLTLSLSGAKDLKINPDNFFEGMKALVVLDLFDTNVTSIPQSIVHLTNLRTLHLSACDLSTNISILGGLKNLEILDLYNSNIVTLPEEIGNLTNLKCLNLTKADISIVTPNVMSRLSKLEELYMEDSFHDWDTVTEEGEYNASFAEVASLSHLATLKIDIEGEKCTSQDIPCSWKNLKQFQVRVTCTSIKWYTLGPNNGLHLDGVNLIKHWVKVLFKRTQCLCLSSCYGFNNVVDLDVAGVFKHLEYLLVFSCREVEYLISIEEEESPQESFGALKTLTIQGMDNMKKIFHGLPPVRLFGQLKFLNVDDCPNLINIFSSDLLQNLENLEDLNVRNCDVLQEVFNTEGFVESEGNHAMPMLSRLRNITLYKLKNLKSIWKGVLPTGSLQNLKTLEVTKCSGLKYLFPSSMGLQQLERLEISSCHEVEKILSNREEEEHVLGTEETSSSRQMQLPTRRNFLNLESPKTFQNLQKLRINGCRRSKNLFSFSLAQGFQQLETLCVSDCYEMEEIIAKEDGHDEGVAQGLLPRLRHLELEDLYDLMSIYRGSLLLDCLEDIKVVRCPKLKRLPLGPKGASNNLVEIIGEQEWFEGLEWEDENVKACLQPLFQAIGTEPILMVSTLLKSVHL* 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00300 1160 Gene3D - 398 484 IPR036388 -
Eupl12g00300 1160 SUPERFAMILY RNI-like 736 1096 - -
Eupl12g00300 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 413 IPR027417 -
Eupl12g00300 1160 Gene3D - 310 397 IPR042197 -
Eupl12g00300 1160 Gene3D Ribonuclease Inhibitor 796 884 IPR032675 -
Eupl12g00300 1160 Gene3D Ribonuclease Inhibitor 885 984 IPR032675 -
Eupl12g00300 1160 Gene3D Ribonuclease Inhibitor 985 1114 IPR032675 -
Eupl12g00300 1160 Pfam Leucine rich repeat 534 593 IPR001611 GO:0005515
Eupl12g00300 1160 PRINTS Disease resistance protein signature 919 935 - -
Eupl12g00300 1160 PRINTS Disease resistance protein signature 178 193 - -
Eupl12g00300 1160 PRINTS Disease resistance protein signature 252 266 - -
Eupl12g00300 1160 PRINTS Disease resistance protein signature 345 359 - -
Eupl12g00300 1160 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 861 965 - -
Eupl12g00300 1160 Coils Coil 31 93 - -
Eupl12g00300 1160 SMART AAA_5 175 312 IPR003593 GO:0016887
Eupl12g00300 1160 Pfam NB-ARC domain 162 379 IPR002182 GO:0043531
Eupl12g00300 1160 SUPERFAMILY L domain-like 473 874 - -
Eupl12g00300 1160 CDD AAA 160 291 - -
Eupl12g00300 1160 FunFam Probable disease resistance protein At1g61300 143 304 - -
Eupl12g00300 1160 Gene3D Ribonuclease Inhibitor 506 795 IPR032675 -
Eupl12g00300 1160 Gene3D - 146 308 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00300 Eupl-Chr12 11933446 11951644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00300 175 485 WRKY Transcription Factor Family AT5G45050 24.841 1.47e-09 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00300 - K13459 msin:131221436 858.596