Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00296 ATGAAGGGCATGCAAGTGCATGAGGAAGATCAGCATGAAAGCGAGGGAGATGGGTTGATAAAGATAGAAGATAGAGATCCAAATCCAAAGTATGAGACAGTTAACGGGGAAGATGAAGTAGTGAGCACCACACAGGAAAGGGAGATGTGGTTGGAAAGAGAACATGAAGATCTGCTTGGTATTGATAATGCTTTGATGTCTTATGGAGACTTCCCACCTCTCCCTGACTTTCCATGCATATCTTCTTCATCATCATCCTCATCTTCTTCTGCTCCGGTTATGGCTAATGCAATTACATGCACATCTTCTTCGTCTTCATCATCGTCGTCATCGAATAACCACCACCACAATCGGCAGGCATCAGAGCATGCGTTGTTGTCGACTGATTCGATGGAGATCCCTCAGCCAGAGATTGATCGGACGGAGTCCGATTGCATGGATGTTATGGAGGAATTTGGAGACATGGACTTGTTCGATACCAACGATATCTGGGACCCATCTTCTTTGTTTCCTTATGAGAACCTAGAAGACGATCGACAAGAACATAATCAGCAACAGCAAGAACAGTTACTCGTACAAGGAGAGGATGAGAAGCCCCCTTCGGAGGATCTTGCCTTGGTGTTCTTCGAATGGCTTAAGTCGAACAAGGAATCGATCTCAGCAGATGATTTGAGAAGCATTAAGCTTAAGAGATCAACGATAGAATGCGCCGCTCGTAGACTTGGTGGTGGGATGGAAGGAATGAAGCAGCTTCTGAAACTAATCCTTGAGTGGGTGCAGAACCATCATCTTCAGAAAAGACGCATTAAAGAAGAAGAGGCCACACCCTTCCCTTATCAACAACAACAAAACCCTAACCCTAATTTTAACTATAATTCTATCACTCCCTCGACTCCATGGATTTCCCAGACAACTTATTTTCCTAATTCGACTAGTACGATGCCAGCTGCAGCGTTTCCTCCTATGCTTGGGTACATGGGGGATGCTATGTTTCCTAATGGAACTGCTGCTGCTGCTTACTCGCCTTCTACCGACTACCCAATGGTTGATTCTGCTCCAACTTGGCCTCCATCTCATTTCTCTCTCTCCTCCCATTACAACTCATTTCAAGATCATCATCTTCCTCCTCCTCCAACGCCACCGGCTGGAGCTTTCGCTGCCTTTGCGAACCAATACCCATGTCAGATTTTTCAAGCCCATGGTGACGGACTAGTTAGGTTGGGTTCTTCGGCAACGAAAGAAGCGAGGAAGAAGAGGATGGCTCGTCAAAGGCGGATCTTTTCACACCATCGTAATCAGAATCAGCAGCAACAGCAACCGACAACTACGGCGGAGGAGGTGGCGAGGCTTGCTAGTGACACAAACTGCACAACCGCACAATCTAATCAGGCCAACTGGGTATTCTGGCCATCTTCTTCTGCTGCAGCTTCGGCAACGCCAGTGGTGGCGTCTGATGCGGCACCACCTCTGCCAGATCGGCCAACCACGCAACCACAACACTATCAGCGCCAGATCAATTTGGAGAGGCGTCAGGGTTGTAAGCCTGAGAAGAACTTGAAGTTTCTCCTGCAGAAAGTGTTGAAGCAAAGCGATGTTGGCAACCTCGGAAGGATAGTGCTGCCAAAAAAAGAAGCAGAAACCTATCTCCCTGAACTGGAAGCAAGAGATGGCATCTCCATTGCCATGGAAGATATCGGAACCTCGCGCATTTGGAACATGCGTTACAGATTCTGGCCAAACAACAAAAGCAGGATGTATCTCCTTGAAAACACAGGAGATTTCGTGCGTTCTAATGGACTCCAAGAAGGAGACTTCATAGTCATCTACTCAGATGTTAAATGTGGCAAATACATGATACGAGGAGTCAAGGTACGGCAACCAGGATCGAAATCTGAGGCAAAAAAGACGGGGAAGGCGCAAAGGAACCTCCATGCAACTTCCGAAGCTGGTAATGGCTTGTCGTCCTCTTCGTCCATCAAAGAAACAGTGTCATGA 1995 0.4722 MKGMQVHEEDQHESEGDGLIKIEDRDPNPKYETVNGEDEVVSTTQEREMWLEREHEDLLGIDNALMSYGDFPPLPDFPCISSSSSSSSSSAPVMANAITCTSSSSSSSSSSNNHHHNRQASEHALLSTDSMEIPQPEIDRTESDCMDVMEEFGDMDLFDTNDIWDPSSLFPYENLEDDRQEHNQQQQEQLLVQGEDEKPPSEDLALVFFEWLKSNKESISADDLRSIKLKRSTIECAARRLGGGMEGMKQLLKLILEWVQNHHLQKRRIKEEEATPFPYQQQQNPNPNFNYNSITPSTPWISQTTYFPNSTSTMPAAAFPPMLGYMGDAMFPNGTAAAAYSPSTDYPMVDSAPTWPPSHFSLSSHYNSFQDHHLPPPPTPPAGAFAAFANQYPCQIFQAHGDGLVRLGSSATKEARKKRMARQRRIFSHHRNQNQQQQQPTTTAEEVARLASDTNCTTAQSNQANWVFWPSSSAAASATPVVASDAAPPLPDRPTTQPQHYQRQINLERRQGCKPEKNLKFLLQKVLKQSDVGNLGRIVLPKKEAETYLPELEARDGISIAMEDIGTSRIWNMRYRFWPNNKSRMYLLENTGDFVRSNGLQEGDFIVIYSDVKCGKYMIRGVKVRQPGSKSEAKKTGKAQRNLHATSEAGNGLSSSSSIKETVS* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00296 664 MobiDBLite consensus disorder prediction 625 664 - -
Eupl12g00296 664 SMART B3_2 523 625 IPR003340 GO:0003677
Eupl12g00296 664 MobiDBLite consensus disorder prediction 480 501 - -
Eupl12g00296 664 Pfam B3 DNA binding domain 524 620 IPR003340 GO:0003677
Eupl12g00296 664 MobiDBLite consensus disorder prediction 100 115 - -
Eupl12g00296 664 CDD BfiI_C_EcoRII_N_B3 521 622 - -
Eupl12g00296 664 ProSiteProfiles B3 DNA-binding domain profile. 523 625 IPR003340 GO:0003677
Eupl12g00296 664 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 193 635 IPR044800 GO:0003700
Eupl12g00296 664 MobiDBLite consensus disorder prediction 627 641 - -
Eupl12g00296 664 MobiDBLite consensus disorder prediction 178 198 - -
Eupl12g00296 664 MobiDBLite consensus disorder prediction 100 129 - -
Eupl12g00296 664 Coils Coil 172 192 - -
Eupl12g00296 664 MobiDBLite consensus disorder prediction 1 33 - -
Eupl12g00296 664 MobiDBLite consensus disorder prediction 1 45 - -
Eupl12g00296 664 Gene3D - 519 639 IPR015300 -
Eupl12g00296 664 FunFam B3 domain-containing transcription factor FUS3 519 634 - -
Eupl12g00296 664 MobiDBLite consensus disorder prediction 642 664 - -
Eupl12g00296 664 SUPERFAMILY DNA-binding pseudobarrel domain 522 618 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00296 Eupl-Chr12 11768322 11771888 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00296 34 656 B3 DNA Binding Superfamily AT3G24650 44.398 1.15e-151 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Eupl12g00296 B3 5.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00296 K09287 - nnu:104589171 709.138