LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl12g00294	ATGATGGAAGACCAGCTTTTCAAGAAGCCCCATAATAGACTTTCTACACAACCTCAACTTACAGAACATGTGCATTCCAGTTCTCGTGGTCATGGGGGCTGTAGTGAAATAATTAAACCTGGTGACAATTCTGCTATTGCTGAAGGAATAGCCTCTGATGTCAAAATTCAAGACAGAAACGGGGGAAAAAAAACTCATTTGATTTCAAGCGATAAAATGTCCGATGGTACTTTATATTCCAGCAATGGTAGGAATTCAGGAAGGAAGATGTTGATGCTTCAAGGGAACTCATGCTCTGATAAAGGAAAAGCTACTTGCACTGAGGTTCCTTCTAGATGTTTCACTAGTAAAGATGACACCCATGTTTTGGATTTGACTGTGCTGAGTGAGTATACTGGAATATCTGAAAGGGCTTGTTCACGTGGTGCGTCAAAAGATCTTGCTGTAGAGTTTAGAAAAGGATCAATATCAGCTGGCCATTCTTCACTTAGTACTTCTTCAAGGGCATCCAGCAATGCCTGTGAGGGGAAAGCTATAATACCTGAAAAGGCTTGTTCACGTGGTGCATCAAAAGATCTTCTTGCTAAAGAGACTAGGAAAGGATTAATAGGCGGGTCTTCACATAGTACTGCAAATTCTTCGAAGGCATCTATCAATGCCTGTGAGGGAAAGACAAGTACGGATTATGGTATACACAATGGTGCTGGGGTGGGTATTGATCATAGGAAAGGGGTTAATTCATCCCGTGATTCTAAACAAAAAACGGAACAAATCATGTCGAAATCTTTGCAGTCTACAACAATGCCTAGGAACACTGGGCAAAGGAGGTTGGTACGCAATGGGTGTATATCTCCATATAATATAGCAAGGGCTAAACACTCAGCTGAAAGCCATGGTAAGAGCTGCGAAGATGGTAAACAGGAAGGTATTGGGAAAATGATCTCCAGTGGTGGAATTCCATCGAGTGAGATACACATTGTTAGCCCTAATTCAGAAGGCAATCAATCTGGTAGAATGGACAAAATGAAAGGAAAAAGGGTAATGGAGGAATTAGCTCCAGAAGATGAGTCTGATGCCAGAGCCGTGCATTTATCGAGCAGTTTCGGGCATTATGGCGGTGTCTTTGTTGACGGCAAGCTATGTTTATGCAGAAGTTCACTAAATCCCATTGAAGAGGCTGATGGAATTGGAGATGCCAATGGAGATGTTTTCAGATGCTTCAAAGAAGGTGGTTGGAGAAGCACACATAGTCGTTCAAAAATAAAATCTTCGGCTTTGTCTGATGAGGTTGGGCGTCTTTCCAGGAGAAACAATGGTACTGGCAATTTACTTGATCAAAACCATGAAAACAGAATGAGAAACAGAGACTGTATTAGTGGAGTAAATACCAGTCCTGAAACTGATTTTCTTGAAGTTAGGGATCCAATTTCTTTTCAGCATGGGCCTTTACGTTTAGTTCAAGCATCTTCCATTGTTATGTCTGAGTTGGACCGAGAAAATGGACAGCATCGTGGAGCGAATCAGCCAACTAAAAGACAAAAGAAACATCCTTCTGGTGAACCTTCAAATGCAAGATCAACCAGAAGTCGGGATCCTTATCGTTGTGGGCCTTGTGGCACCTCGGGTCCAATTATAGAAATTGATGAGTTGTCCTCTGAAATCAGATGCAGAAGACCACCCCAAGATACAAGTCGAATGGTTCATGTTGACCCAGATGCTAGGGCAAGACAATTGGAAGCAGATGAGACATTGGCTCGTCAACTCCAAGAACAATTCTATAATGAGTTGCCAGTAGTTGGGGGTGGAGAGATTGATGCTAGTATAGCATGGACACTGCAGCAGGAGGATGCGCAACATGCTTCTTCTCTTGGGAGTCAGCATGTATCACATCCTAGAGATTCATCGAGGTCACTTAGGCGACACCCATCACGGTTTTTCCAAAGTTCTTCAGTTCGGTTAGCAAACCGTGCTCGAGCTCCTACCTCTGCTAGAATGGCACGTTTGAGGAATAGCTTTCGGAGCCATTCTCCTAGATTATCATCTAGAGAACGGAGTCTTCAGTTTCCGCCGAATATGGATCTTGACACAAGAATTCATTTGCTAGAAGCATTGGAAGCTGCAGCTGGCAACCATAATAGCATGACAGTGGCTGGTCATTTCTTCCAAGTTCAACGTGATTTTAATGAAAATGATTATGAGATGTTATTAGCCCTCGATGAGGACAATCACCAACATGTAGGTCCATCTCTTCACCAGATTAATGGCTTGCCAGAGTCAACAGTCCAGAATGATAACTTTGAAGAAGCCTGTGCCATCTGCCTTGAAACTCCAACCACTGGAGATACCATTCGCCATCTCCCCTGCTTACACAAATTTCACAAAGATTGCATTGATCCATGGCTGAGAAGAAGTACATCGTGTCCAGTTTGCAAGTCATGCATCACTTGA	2448	0.4297	MMEDQLFKKPHNRLSTQPQLTEHVHSSSRGHGGCSEIIKPGDNSAIAEGIASDVKIQDRNGGKKTHLISSDKMSDGTLYSSNGRNSGRKMLMLQGNSCSDKGKATCTEVPSRCFTSKDDTHVLDLTVLSEYTGISERACSRGASKDLAVEFRKGSISAGHSSLSTSSRASSNACEGKAIIPEKACSRGASKDLLAKETRKGLIGGSSHSTANSSKASINACEGKTSTDYGIHNGAGVGIDHRKGVNSSRDSKQKTEQIMSKSLQSTTMPRNTGQRRLVRNGCISPYNIARAKHSAESHGKSCEDGKQEGIGKMISSGGIPSSEIHIVSPNSEGNQSGRMDKMKGKRVMEELAPEDESDARAVHLSSSFGHYGGVFVDGKLCLCRSSLNPIEEADGIGDANGDVFRCFKEGGWRSTHSRSKIKSSALSDEVGRLSRRNNGTGNLLDQNHENRMRNRDCISGVNTSPETDFLEVRDPISFQHGPLRLVQASSIVMSELDRENGQHRGANQPTKRQKKHPSGEPSNARSTRSRDPYRCGPCGTSGPIIEIDELSSEIRCRRPPQDTSRMVHVDPDARARQLEADETLARQLQEQFYNELPVVGGGEIDASIAWTLQQEDAQHASSLGSQHVSHPRDSSRSLRRHPSRFFQSSSVRLANRARAPTSARMARLRNSFRSHSPRLSSRERSLQFPPNMDLDTRIHLLEALEAAAGNHNSMTVAGHFFQVQRDFNENDYEMLLALDEDNHQHVGPSLHQINGLPESTVQNDNFEEACAICLETPTTGDTIRHLPCLHKFHKDCIDPWLRRSTSCPVCKSCIT*	816

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl12g00294	815	PANTHER	SI:CH211-59O9.10	463	814	-	-
	Eupl12g00294	815	MobiDBLite	consensus disorder prediction	311	342	-	-
	Eupl12g00294	815	Pfam	Ring finger domain	769	811	IPR001841	-
	Eupl12g00294	815	ProSiteProfiles	Zinc finger RING-type profile.	770	811	IPR001841	-
	Eupl12g00294	815	MobiDBLite	consensus disorder prediction	11	28	-	-
	Eupl12g00294	815	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	737	815	IPR013083	-
	Eupl12g00294	815	MobiDBLite	consensus disorder prediction	1	39	-	-
	Eupl12g00294	815	MobiDBLite	consensus disorder prediction	499	540	-	-
	Eupl12g00294	815	MobiDBLite	consensus disorder prediction	257	271	-	-
	Eupl12g00294	815	SMART	ring_2	770	810	IPR001841	-
	Eupl12g00294	815	SMART	ringv_2	769	811	IPR011016	GO:0008270
	Eupl12g00294	815	MobiDBLite	consensus disorder prediction	321	337	-	-
	Eupl12g00294	815	MobiDBLite	consensus disorder prediction	430	447	-	-
	Eupl12g00294	815	MobiDBLite	consensus disorder prediction	619	641	-	-
	Eupl12g00294	815	MobiDBLite	consensus disorder prediction	418	464	-	-
	Eupl12g00294	815	SUPERFAMILY	RING/U-box	769	814	-	-
	Eupl12g00294	815	CDD	RING-H2_PA-TM-RING	770	811	-	-
	Eupl12g00294	815	MobiDBLite	consensus disorder prediction	238	271	-	-
	Eupl12g00294	815	FunFam	RING/U-box superfamily protein	735	815	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl12g00294	Eupl-Chr12	11646901	11683887	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl12g00294	518	815	C3H Transcription Factor Family	AT1G04790	46.474	8.57e-67	232

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl12g00294	-		-	nnu:104587902	675.241