Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00284 ATGGTGAACGAGCTTCGAATTATTGATTCTAACATCTGGAAGGCCTGCGCGGGAAGTTCAATTCAAACCCCGATTGTTGATTCTTGGGTTTACTACTTCCCCCAAGGTCACGCCGAGCGAGCCTTGTCTCCTCCAGATTTCTCCTCTACTATTTGTTCCAAACCCATGATTCTTTGTCGAGTCGACTCCATTCTTTTCCTCGCGAATCCTCACTCCGACGAGGTTTTTGCTAAGATCCGTCTCGAACCTTTTGATCGATACCTTGCAGGGATCTTCCGTACCCCGCTGGCTCTGGGAATTTCAAACAGGGAGAGCAATGACAGCGAGGAGATGGTTCGTTCGTTCGCGAAGATCCTCACCTCGAGTGATGCAAACAATGGTGGAGGATTCTCGGTCCCGAAATTTTGCGCTACGTCGATCTTTCCGGCCCTGAATTTCAACGTTGCCAAGCCACGGCAGACGATTTCAATGCGTGACGTTCATGGAGTGCTTTGGAATTTCTGCCACATCTACCGTGGTTCCCCTCTACGCCATCTCCTAACGACTGGATGGAGTAAGTTTGTGACCCAGAAGAATCTCATCGCTGGGGATACAGTGATTTTCATGAAGAATCGGACTGGTGACCTATCGGTGGGCATCCGTCGGTCGACGAGGTCAAGCGTGACTGTGGATAGTCCACGGTGGCAGATGGCGCAAGCGGCGAAATTGGAACAGGAGTTGAGTAGAGGAGAGTCATGCTGGAGGAGTAACAGGGGTAGGGTTTCTGCTGAGTCAGTCAGGGAGGCTGCTGAACTAGCGGGAACCAATAGGCCTTTCGAGATTATCTATTATCCAAGGGCGGGGTTACCGGACTTTATTGTGGAAGCACAGAGGGTTGAGGAATCATCGAGAAGGTCTTGGAAGGCTGGGATGATGGTTAAAATGTCAGTGAAGACGGAGGACTCGTCTAGTATGACGTGGTTCCAGGGGACAGTTTCTTCCGCTGCAGTTCCACATCACGGGCCATGGTGTGACTCTCCCTGGCGCATGCTTCAGGTTATTTGGGACAAGCCTGAAGTTTTGCGGAATGTAAAGAGTGTGAGCCCTTGGCAACTTGAATTGGTCACGAAGATACTCAGAGTTCCCCAGAATCCTGAGTTGCCGACTGATCGAGAAGGGAGCATGTTCTTTCCCATGTCGGGATTAACTAATTCAATGATGGGGCACTTGGAGGACCCTTCATTGTTCAGTTATACCACTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATTCCACTTTTCCTGCTGGCATGCAGGTAGCTAATAGTACCCATCACATGTACTCTGAACATCTAGATGGAAACATGGCACCAAAGTTGAGTTCAGTGTCTACTGAACTGACCATTGGGAGTACAGCACAAGCCGACAACTCATTGAAGCATAGCCGGGGCAGTAGCACAGAGCTTCCTGCCAACCGAACCTCTAACTCAATGACCAAAGCTGGTGGTGGTTCCTTTCGGTTATTTGGTAAGACCATCCAGATAAACCAGCCTGCTGTGTCGGGTGGGTGA 1551 0.5035 MVNELRIIDSNIWKACAGSSIQTPIVDSWVYYFPQGHAERALSPPDFSSTICSKPMILCRVDSILFLANPHSDEVFAKIRLEPFDRYLAGIFRTPLALGISNRESNDSEEMVRSFAKILTSSDANNGGGFSVPKFCATSIFPALNFNVAKPRQTISMRDVHGVLWNFCHIYRGSPLRHLLTTGWSKFVTQKNLIAGDTVIFMKNRTGDLSVGIRRSTRSSVTVDSPRWQMAQAAKLEQELSRGESCWRSNRGRVSAESVREAAELAGTNRPFEIIYYPRAGLPDFIVEAQRVEESSRRSWKAGMMVKMSVKTEDSSSMTWFQGTVSSAAVPHHGPWCDSPWRMLQVIWDKPEVLRNVKSVSPWQLELVTKILRVPQNPELPTDREGSMFFPMSGLTNSMMGHLEDPSLFSYTTFPAGMQGARQDSTFPAGMQVANSTHHMYSEHLDGNMAPKLSSVSTELTIGSTAQADNSLKHSRGSSTELPANRTSNSMTKAGGGSFRLFGKTIQINQPAVSGG* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00284 516 MobiDBLite consensus disorder prediction 466 495 - -
Eupl12g00284 516 CDD B3_DNA 113 215 IPR003340 GO:0003677
Eupl12g00284 516 SMART B3_2 115 217 IPR003340 GO:0003677
Eupl12g00284 516 Gene3D - 300 373 - -
Eupl12g00284 516 Gene3D - 112 217 IPR015300 -
Eupl12g00284 516 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 507 IPR044835 GO:0003677|GO:0006355|GO:0009725
Eupl12g00284 516 Pfam Auxin response factor 262 345 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Eupl12g00284 516 ProSiteProfiles B3 DNA-binding domain profile. 115 217 IPR003340 GO:0003677
Eupl12g00284 516 MobiDBLite consensus disorder prediction 466 496 - -
Eupl12g00284 516 FunFam Auxin response factor 113 217 - -
Eupl12g00284 516 Pfam B3 DNA binding domain 115 216 IPR003340 GO:0003677
Eupl12g00284 516 SUPERFAMILY DNA-binding pseudobarrel domain 113 220 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00284 Eupl-Chr12 11443844 11445750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00284 6 515 B3 DNA Binding Superfamily AT1G77850 40.926 1.32e-124 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Eupl12g00284 B3 1e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00284 - - nnu:104612061 607.06