Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00244 ATGGGGCGTTATCGCGGTGTTCCCAGTTCTGCAGATGAGGATCTGAGCCAAAGGTCAAAGAGAAAAAGGGCTGCTTCAAGTGGAGAGAATTTAGAGTCTGCAGCTGCAGGTCAAGGAACAAGCGAAGGGAAAAGGGCCTTATACCACTGCAATTATTGCAATAAAGACATTTCTGGAAAGATTCGTATTAAGTGCGTAAAGTGTCCGGATTTTGACCTATGTGTGGAGTGCTTTTCTGTTGGAGCTGAGGTTAAACCTCACAAAAGCAATCACCCTTACAGGGTTATGGACAATTTGTCATTCCCCCTTATATGTCAAGATTGGAATGCAGATGAAGAGATACTTCTTCTTGAGGGAATTGAAATGTATGGATTGGGGAACTGGGCAGAAGTTGCAGAGCACGTTGGTACAAAGAGCAAGGTTCACTGTATTGACCACTATACAACAATTTACATGAACTCCCCATGCTTTCCTCTTCCAGACATGTCTCATGTTGTCGGAAAGAATAAAAAGGAGCTTCTTGCCATGGCAAAAGGGCATGGTGAGGACCAAAAAGGATTTCCTACTCTTGCTGAGCTCACACTGAAGGAAGAATCTCCATTCTCTCCTCCAAGAGTCAAGATTGAAGAAGCTGCAGTTGGTCGATCTCCATCTAGCTTAACTGCAGATTCTGGGGCAGGTTGTAGCAGCACACATACAGCAACAGTAGGTGCAGGTAAGAAGGCATCAAACATGGCCCAGATCAAGGATGGTCCTGGTGTAATCAAAATGGAAGATTCTCAAGTGGACAGGAGCATCGGAGGGAAGAAACCTAAAGCTTCCGGGGATGAGGGGCCTTCTATGACTGAGCTGAGTGGCTATAATCCCAAGAGGCAGGAGTTTGATCCTGAGTATGATAACGATGCAGAGCAGTCACTCGCTGAGATGGAGTTTAAGGACACGGACAACAAAGATGAGCGTGAACTGAAGCTGCGAGTTTTGCGTATTTATTTAAAAAGGCTTGATGAGAGGAAACACAGGAAGGATTTCATATTGGAAAGAAATTTACTTTATCCTGATCCGTTGGAGAAGGACCTCTCTCCCGAGGAGAAGGAGATATATCAGCGCTATAAGGTCTTCATGCGTTTCCATTCCAAAGAAGAGCATGAAGAATTGATTAAGACTGTTATTGAGGAACATAGAATTCGGAAAAGAATTCAAGAACTTCAGGAAGCTCGAGATGTTGGCTGTCGTACATCAGCTGAGGCAGATAGGTATCTTGAACAGAAGAGGAATAAGGAAGCTGAAGAACGTGCCCATAAAGCGAAGGAAAGCCCTCAGGTTGGTCCAAGTGGTAAAGTACTGCAAAGGGTGAATCGCCCTAAAGGAGAACCTGATAGCAAGGATTCTTCTTCTACAACTGCAGGACAGGCTTCCGCAAGTTCCTTGGATGATTGGGACATCGCGGGACTTCCTGGGTCGGAATTACTATCTGAAACTGAACAACAGCTATGCCGTGAGACCAAGTTGCTCCCTACTCAATATCTAAAAATGCAGGAGGTCATGTCGATAGAGATCTTCAAAAACAATATAACCAAGAAATCTGACGCCCATCGCCTCTTCAATGCGGAGCCAAGCAAAGTCGATAGAGTATACGATGTGCTTGTAAACAAGGGAATTGCTCAACCTTGA 1671 0.4482 MGRYRGVPSSADEDLSQRSKRKRAASSGENLESAAAGQGTSEGKRALYHCNYCNKDISGKIRIKCVKCPDFDLCVECFSVGAEVKPHKSNHPYRVMDNLSFPLICQDWNADEEILLLEGIEMYGLGNWAEVAEHVGTKSKVHCIDHYTTIYMNSPCFPLPDMSHVVGKNKKELLAMAKGHGEDQKGFPTLAELTLKEESPFSPPRVKIEEAAVGRSPSSLTADSGAGCSSTHTATVGAGKKASNMAQIKDGPGVIKMEDSQVDRSIGGKKPKASGDEGPSMTELSGYNPKRQEFDPEYDNDAEQSLAEMEFKDTDNKDERELKLRVLRIYLKRLDERKHRKDFILERNLLYPDPLEKDLSPEEKEIYQRYKVFMRFHSKEEHEELIKTVIEEHRIRKRIQELQEARDVGCRTSAEADRYLEQKRNKEAEERAHKAKESPQVGPSGKVLQRVNRPKGEPDSKDSSSTTAGQASASSLDDWDIAGLPGSELLSETEQQLCRETKLLPTQYLKMQEVMSIEIFKNNITKKSDAHRLFNAEPSKVDRVYDVLVNKGIAQP* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00244 556 MobiDBLite consensus disorder prediction 217 240 - -
Eupl12g00244 556 SUPERFAMILY RING/U-box 48 111 - -
Eupl12g00244 556 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Eupl12g00244 556 CDD SANT 108 150 IPR001005 -
Eupl12g00244 556 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 155 IPR017930 -
Eupl12g00244 556 FunFam Transcriptional adapter 2 101 153 - -
Eupl12g00244 556 FunFam Transcriptional adapter 2 471 555 - -
Eupl12g00244 556 MobiDBLite consensus disorder prediction 424 479 - -
Eupl12g00244 556 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Eupl12g00244 556 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 48 551 - -
Eupl12g00244 556 Gene3D - 39 96 IPR043145 -
Eupl12g00244 556 SUPERFAMILY Homeodomain-like 100 154 IPR009057 -
Eupl12g00244 556 CDD ZZ_ADA2 48 96 IPR041983 -
Eupl12g00244 556 Gene3D - 106 155 - -
Eupl12g00244 556 Coils Coil 416 436 - -
Eupl12g00244 556 MobiDBLite consensus disorder prediction 1 37 - -
Eupl12g00244 556 ProSiteProfiles SWIRM domain profile. 470 556 IPR007526 GO:0005515
Eupl12g00244 556 SUPERFAMILY Homeodomain-like 462 553 IPR009057 -
Eupl12g00244 556 SMART zz_5 44 89 IPR000433 GO:0008270
Eupl12g00244 556 PIRSF Txn_adaptor_ADA2 35 556 IPR016827 GO:0003713|GO:0006357|GO:0035065
Eupl12g00244 556 Pfam Zinc finger, ZZ type 47 88 IPR000433 GO:0008270
Eupl12g00244 556 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Eupl12g00244 556 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Eupl12g00244 556 Gene3D - 470 555 IPR036388 -
Eupl12g00244 556 Pfam Myb-like DNA-binding domain 106 149 IPR001005 -
Eupl12g00244 556 MobiDBLite consensus disorder prediction 261 293 - -
Eupl12g00244 556 MobiDBLite consensus disorder prediction 212 241 - -
Eupl12g00244 556 SMART sant 104 153 IPR001005 -
Eupl12g00244 556 FunFam Transcriptional adapter 41 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00244 Eupl-Chr12 9927516 9972037 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00244 1 554 EF-hand Containing Proteins AT3G07740 51.483 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Eupl12g00244 Myb_DNA-binding 4.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00244 K11314 - nnu:104606608 876.315