Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00238 ATGGAGTACGATGCCGGAATTCAGATGTCCATGGCGGCCGTGACGGAGGGATCTTCCCTCTCCCCGCCATTGGATGAAGATACAGTATGGCAAATGAACTTGAGATCCAATGAAACTATGGAATCTGGACCCTATCCTGAGCGTCCAGGAGAGCAAGACTGTGCTTATTACATCCGGACTGGTCTATGTAGATACGGAATGACATGTCGATATAATCATCCTCCTAATAGGAAGCTGGCTGTTGCTGCTGCAAGGATAAAGGGAGGGTACCCTGAAAGAGTAGGGCAACCTGAATGTCAGTACTACTTGAAGACAGGAACATGCAAATTTGGAGCAACATGCAAGTTTGATCATCCTAGAGACAAGGCTGGAATTGCTGGAAGAGTTCTATTAAATATTTGTGGCTATCCACTCCGTCCGAATGAGAAGGAGTGTGCTTATTATTTAAGAACTGGACAGTGTAAGTTTGGAAATACTTGTAAATTCCACCATCCAGAACCATCTAGTACGATGGTGTCGTTGCGTGAATCTCCTGTTTATCCTTCTGTACATTCCCCTACAACTCCTGGTCAGCAGTCTTATCCAGGAGGATTGACAAACTGGCCCTTGTCAAGGGCTCCTTTTATTCCTAGTCCACGTTGGCAAGGTCCTTCAAGTTATGCTCCGTTGATTCTACCTCAAGGGGTGGTACCAGTCTCCCCTGGCTGGAATGCATATACTGGTCAGCTGGGGTCAGTTTCATCTCTGGAGAGCCCGCAGCAAACACTGGGAACTAGTCAATATTATGGGACTTCACGGCAAAGTGAAACAAATACTGGAGCACACAGAACATTTTCTTCCTACCGTACTGGCTCTGTCCCTATGGGGCTGTATGCATTGCAGAGGGAGAACATATTTCCTGAGCGACCCGATCAACCTGAATGCCAGTTTTACATGAAGACTGGAGATTGTAAGTTTGGTGCAGTTTGCAGGTTCCATCATCCTAGAGAGAGACTGCTTCCTGTTCCGAACTGTGTGTTGAGTCCACAGGGCCTTCCACTACGTCCGGGAGAACCTTTGTGCATCTTTTATACTCGTTATGGAATCTGCAAATTTGGTCCAAATTGCAAATTTGACCATCCTATGGGAACCTTTACGTATGGTCTTTCTGCATCATCTTCAGCCAATGTCCCGGTTGTTCGGCGTTTGTTAGGATCCTCATCAGGAACTGCGGTATCACCTTTGTCATCAGAAGGACCTGTTGATGCAGGCTCAGGAAAGTCCAGGCGACTTTCACTGTCAGAGACACGACAGATGCCTTCTGGTGATGAAAACATTGATGCAGAGGGATTCCACGCCACCTCAAGCATTGGGCCTGTTACTTCTTTTTCTTAA 1374 0.468 MEYDAGIQMSMAAVTEGSSLSPPLDEDTVWQMNLRSNETMESGPYPERPGEQDCAYYIRTGLCRYGMTCRYNHPPNRKLAVAAARIKGGYPERVGQPECQYYLKTGTCKFGATCKFDHPRDKAGIAGRVLLNICGYPLRPNEKECAYYLRTGQCKFGNTCKFHHPEPSSTMVSLRESPVYPSVHSPTTPGQQSYPGGLTNWPLSRAPFIPSPRWQGPSSYAPLILPQGVVPVSPGWNAYTGQLGSVSSLESPQQTLGTSQYYGTSRQSETNTGAHRTFSSYRTGSVPMGLYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERLLPVPNCVLSPQGLPLRPGEPLCIFYTRYGICKFGPNCKFDHPMGTFTYGLSASSSANVPVVRRLLGSSSGTAVSPLSSEGPVDAGSGKSRRLSLSETRQMPSGDENIDAEGFHATSSIGPVTSFS* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00238 457 Gene3D - 47 123 - -
Eupl12g00238 457 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Eupl12g00238 457 SUPERFAMILY CCCH zinc finger 139 167 IPR036855 GO:0046872
Eupl12g00238 457 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Eupl12g00238 457 SMART c3hfinal6 302 329 IPR000571 GO:0046872
Eupl12g00238 457 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Eupl12g00238 457 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Eupl12g00238 457 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Eupl12g00238 457 SMART c3hfinal6 348 375 IPR000571 GO:0046872
Eupl12g00238 457 Gene3D - 294 377 - -
Eupl12g00238 457 PANTHER PROTEIN PHOSPHATASE RELATED 31 396 - -
Eupl12g00238 457 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Eupl12g00238 457 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Eupl12g00238 457 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 350 375 IPR000571 GO:0046872
Eupl12g00238 457 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Eupl12g00238 457 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 166 IPR000571 GO:0046872
Eupl12g00238 457 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 304 329 IPR000571 GO:0046872
Eupl12g00238 457 SUPERFAMILY CCCH zinc finger 97 122 IPR036855 GO:0046872
Eupl12g00238 457 MobiDBLite consensus disorder prediction 256 277 - -
Eupl12g00238 457 Gene3D - 124 177 - -
Eupl12g00238 457 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872
Eupl12g00238 457 FunFam Zinc finger nuclease 2 47 124 - -
Eupl12g00238 457 ProSiteProfiles Zinc finger C3H1-type profile. 348 376 IPR000571 GO:0046872
Eupl12g00238 457 SUPERFAMILY CCCH zinc finger 305 332 IPR036855 GO:0046872
Eupl12g00238 457 SUPERFAMILY CCCH zinc finger 52 76 IPR036855 GO:0046872
Eupl12g00238 457 SUPERFAMILY CCCH zinc finger 351 376 IPR036855 GO:0046872
Eupl12g00238 457 MobiDBLite consensus disorder prediction 400 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00238 Eupl-Chr12 9621481 9642741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00238 29 441 C2H2 Transcription Factor Family AT3G02830 60.766 2.77e-169 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl12g00238 zf-CCCH 1.5e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00238 - - msin:131239576 835.869