Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00232 ATGACGGCGTTTACGGGAAACAGGAAGAAATTTGACGCACTATTAGATGTTGTAGAGAGGGAGTTGGCGCTTCCCACGTTTACGACGGCGATCCCCCGAGCCTCAAGATCAGTACCAACGAATGTGAAGATGAATGTTCATTGGTCAGTCACGACGTGTAGGAGAACTAAAAATAAAGGAAAGAAGGTTGCCTTCCTTGCACCTGAGAAGGTGATTACCGAGAAGAAGAAAAACTCCCACCACTACAAAGGGAAGGGGAAGACAGTGATGAACCTACCTTCGTCGTCGTTATCATCATCATCATCAGCACCGCCGATTCCTGCACTATTGATGCAGATGATCAATTGGGTTGAGGGCACTATCCCTGTTTGGTTGATGGAAAAGCGGCTCTTCTGTAGTGACGTGAAAAAAAGTCAGAGCCGTCTGTTCATCCCCAAGTGCAAAGCGTTGATGGAGTACCTAACGGAGGTAGAGAAGGCATTGTTAGAAGACGAGAAGAAGCTGGAAGTGAAGGTGGTGGATCCCATGGGACGGTTGTGGGACCTAGAATTGACAAGGTGGCGGAGTGTTCAGCAGTACGTATTGATCAAACAGTGGACGGGTTTTGTTGACGCGAATGGACTGCAAGAGGATCGATACGCTACAGCTCTGGGCCTTCCGACTACCACATCCCCAAGGTGGAGGCGAGTCTAA 693 0.4892 MTAFTGNRKKFDALLDVVERELALPTFTTAIPRASRSVPTNVKMNVHWSVTTCRRTKNKGKKVAFLAPEKVITEKKKNSHHYKGKGKTVMNLPSSSLSSSSSAPPIPALLMQMINWVEGTIPVWLMEKRLFCSDVKKSQSRLFIPKCKALMEYLTEVEKALLEDEKKLEVKVVDPMGRLWDLELTRWRSVQQYVLIKQWTGFVDANGLQEDRYATALGLPTTTSPRWRRV* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00232 230 CDD B3_DNA 124 210 IPR003340 GO:0003677
Eupl12g00232 230 Gene3D - 121 215 IPR015300 -
Eupl12g00232 230 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 70 211 IPR005508 GO:0003677
Eupl12g00232 230 Pfam B3 domain-containing protein At2g31720-like 107 204 IPR005508 GO:0003677
Eupl12g00232 230 SUPERFAMILY DNA-binding pseudobarrel domain 123 211 IPR015300 -
Eupl12g00232 230 ProSiteProfiles B3 DNA-binding domain profile. 127 230 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00232 Eupl-Chr12 8469935 8470656 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00232 125 210 RAV Transcription Factor Family AT1G51120 36.667 5.35e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Eupl12g00232 DUF313 1.9e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00232 - K01307 gmx:102663833 67.3958