Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00230 ATGGCGAACCCATCTATGGCTCGGTCCTTCCTCCAAGTCGCGGCGTCAGAGGAGGTTGCTGCGCCACCGCTTAGAGTAGTTCAGATAGAAGGCCTGGTTATTTTGAAGATAATTAAACACTGCAAGGAGTTTTCGCCAGCTCTTGTTACAGGGCAACTTCTTGGGTTAGATGTTGGTAGTGTTCTTGAAGTTACCAACTGTTTCCCCTTCCCGATTCGAGAGGAAGATGAGGAGATTGAAGCAGATGGGGCTAATTATCAGCTTGAAATGATGAGATGCTTGAGAGAGGTTAATGTCGACAATAACACTGTTGGATGGTATCAGTCAACTTTGCTAGGATCTTTTCAGACAGTGGAACTGATTGAGACCTTTATGAATTATCAGGAGAATATCAGACGGTGTGTTTGCATTATATATGATCCGTCAAGGTCCAATCAAGGCGTTTTAGCTCTCAAGGCCTTGAAGCTCTCAGATTCTTTCATGGATCTTCACCGCAATAACAATTTCACTGGAGAGAAGTTGAGGGAAAAAAATTTGTCGTGGGTGGATATCTTTGAGGAAATACCTATTAAAGTCTCAAATTCTGCGCTTGTCAGTGCCTTCATGACAGAGCTGGAAGCTGATACACCTGTTACCCAGTGTGATTATGATCGTCTACAATTATCAACAAAACCATTTATGGAGAGGAATGTAGAATTTTTGATTGAATGCATGGATGATCTATCAATGGAACAGCAGAAGTTCCAATTCTACTATCGAAACCTCTCTCGTCAGCAAGCCCAGCAGCAGGCATGGCTTCAAAAGAGAAGGGCAGAGAACATGGCACGTAAAGTCGCAGGAGAAGAACCATTGCCCGAGGAGGATCCATCCAACCCCATCTTTAAACCAGTTCCTGAGCCATCACGACTGGACAGTTTTCTCATAACAAATCAAATTTCTAACTACTGCAACCAAATCAACGGGGTTGCGGGGCAGAGCTTCAGCAGATTATATTTAACGAAGGCTTTACATGAGAATTGA 1020 0.4353 MANPSMARSFLQVAASEEVAAPPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMDLHRNNNFTGEKLREKNLSWVDIFEEIPIKVSNSALVSAFMTELEADTPVTQCDYDRLQLSTKPFMERNVEFLIECMDDLSMEQQKFQFYYRNLSRQQAQQQAWLQKRRAENMARKVAGEEPLPEEDPSNPIFKPVPEPSRLDSFLITNQISNYCNQINGVAGQSFSRLYLTKALHEN* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00230 339 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 20 323 - -
Eupl12g00230 339 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 22 339 IPR027524 GO:0003743|GO:0005737|GO:0005852
Eupl12g00230 339 ProSiteProfiles MPN domain profile. 27 160 IPR037518 -
Eupl12g00230 339 SMART pad1_6 26 159 IPR000555 GO:0005515|GO:0008233|GO:0008237
Eupl12g00230 339 CDD MPN_eIF3h 25 288 IPR027524 GO:0003743|GO:0005737|GO:0005852
Eupl12g00230 339 Pfam C-terminal region of eIF3h 145 338 IPR045810 -
Eupl12g00230 339 Gene3D Cytidine Deaminase, domain 2 3 216 - -
Eupl12g00230 339 FunFam Eukaryotic translation initiation factor 3 subunit H 5 215 - -
Eupl12g00230 339 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 25 128 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00230 90 339 Eukaryotic Initiation Factors Gene Family AT1G10840 86.400 2.16e-161 449