Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00220 ATGAGCTCGAAGGAGAGACCCACTCTCGGTGGCACGCGGATTAAGACCCGCAAACGGAATATAGCAGCACCTCTGGACCCTGCAACATTTGCAGATGCAGTGGTCCAGATATATCTGGATAATGCTGGTGATCTTGAACTTGTTGCTAGAAGCATCGAATCTTCAAACCTCAACTTCTCAAGATACGGTGACACCTTTTTTGAGGTGGTCTTCACAGGTGGGCGTACTCAACCTGGCACAACAAAGTCTGATGAGGGGGAGCGTCACACCTATTCTGTTATAGATTGTGAGCCAAAACGTGAAGCCATTTTGCCATCTGTACTCTACATACAGAAGATCTTGCGCCGGAGGCCTTTCCTAATAAAGAATCTCGAAAATGTCATGCGAAGATTCCTGCAGTCATTGGAGCTTTTTGAGGAGAATGAAAGGAAGAAGCTTGCAATTTTCACAGCCCTTACATTCTCTCAGAAGCTATCGGGGCTTCCGCCAGAGACAGTTTTCCAGCCGCTGCTCAAGGATAATCTTGTGGCCAAGGGGATAGTGCTTTCATTCATAACAGACTTCTTCAAGGAATATCTGATTGATAACAGCCTTGATGATCTGATTTCACTTCTGAAGCGAGGTAAAATGGAGGACAATCTCCTTGACTTCTTCCCCTCTGCAAAGCGCTCTGCTGAAGGTTTCTCTGAGCATTTCACCAAGGAAGGGCTGGTAGCTTTGGTCGAATACAATGAGAAGAAAATATTCGAGGTTAAACTGAAGGAGATGAAATCCGCATTGACAACCCAGATAGCAGAGGAGACTGATATATCTGAAGTCATAGAAACTGTGAAGCAACGTGTTAAGGATGCTAATTTACCTGACATTGAGGTTGTGCGCATTTTATGGGATGTTATAATGGATGCTGTTCAGTGGTCAGGGAAAAATCAGCAGCAAAATGCTAATGCAGCACTCCGTCAGGTGAAAACATGGGCAAAACTTTTAAATACCTATTGTACCAATGGAAAGCTGGAGCTTGAACTTGTGTACAAAGTTCAGATTCAATGCTATGAGGATGCCAAACTAATGAAGTTATTCCCAGAAATCGTGAGAAATCTCTATGACCAGGATGTGCTTGCAGAAGATACCATTCTCCTCTGGTTCCGTAAAGGAACAAACCCAAAGGGCAGGCAAACGTTTGTGAAGGCTTTGGAGCCATTTGTGAATTGGCTGGAGGAAGCTGAAGAAGAAGAGTAA 1236 0.4434 MSSKERPTLGGTRIKTRKRNIAAPLDPATFADAVVQIYLDNAGDLELVARSIESSNLNFSRYGDTFFEVVFTGGRTQPGTTKSDEGERHTYSVIDCEPKREAILPSVLYIQKILRRRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALTFSQKLSGLPPETVFQPLLKDNLVAKGIVLSFITDFFKEYLIDNSLDDLISLLKRGKMEDNLLDFFPSAKRSAEGFSEHFTKEGLVALVEYNEKKIFEVKLKEMKSALTTQIAEETDISEVIETVKQRVKDANLPDIEVVRILWDVIMDAVQWSGKNQQQNANAALRQVKTWAKLLNTYCTNGKLELELVYKVQIQCYEDAKLMKLFPEIVRNLYDQDVLAEDTILLWFRKGTNPKGRQTFVKALEPFVNWLEEAEEEE* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00220 411 SUPERFAMILY ARM repeat 253 408 IPR016024 -
Eupl12g00220 411 Coils Coil 121 141 - -
Eupl12g00220 411 CDD W2_eIF5C_like 216 404 IPR043510 -
Eupl12g00220 411 FunFam ARM repeat superfamily protein 243 411 - -
Eupl12g00220 411 Gene3D - 242 411 - -
Eupl12g00220 411 SMART 542_3 325 410 IPR003307 GO:0005515
Eupl12g00220 411 ProSiteProfiles W2 domain profile. 246 411 IPR003307 GO:0005515
Eupl12g00220 411 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 2 411 - -
Eupl12g00220 411 Pfam eIF4-gamma/eIF5/eIF2-epsilon 338 411 IPR003307 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00220 Eupl-Chr12 7536396 7557838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00220 300 407 Eukaryotic Initiation Factors Gene Family AT2G34970 32.727 5.37e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00220 - - vvi:100259803 737.643