Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00200 ATGGCTTCAATGAACAATTGGTTGGGTTTCTCTCTATCTCCTCAAGAACTCCCTTCACAGTCTCAGAACCAGGCCCCACCCACCGTCAGTCGTCTCGGCTTCAACTCTGATGAAGTATCCGGTAGCGATGTATCTGGCGATTGCTTCGATCTATCTTCTGACTCAACGGCTCCTTCGCTACACATTCCATCCTTAAGACATGATGGCCCTTTTGGTATCTTAGAAGCCTTCAACAGAACCCATCAACCATCTCAAGATTGGAACATGAACTGTGATGCCAACTTCAAAACAAGCTCCGAGCTTTCCATGCTCATTGGTAGTTCGAGCAGTAACCAGAACCATGAGGAGCCGAAGCTCGAAGACTTCCTCGGGGGGCACTCATTCTCCGATCATGAACAGAAACTTGCCGGGTGCAACGCGATTACTACGGCTTACAATAGCACCGGAGACTACATGTTCTCAAACTGTTCACTACAGATTCCGGCATCAGCATCAGATGGTGGTGGGGGTAGCGTGAACAACAACTCAATCGGGTTATCGATGATCAAGACGTGGTTGAGGAACCAGCCAGCACCGCCCCAGCCAGAGAACAAGAATGATGACGTGAGCAGTTGTGGTGGGGCCTCGGCGGCAAATGGTGGAACCTTGACGAATGCACAGACCTTGTCTCTATCGATGAGCACTGGATCACAGTCCAGTTCTCCTTTGCCGCTACTAACAGCGGCCGGTGGTGGAAGCGGAGAGGAGAGTTTTTCCTCGGAGAATAAGCAGACGACGTCAGCCCTAGATGGCAAAAACGGTTCTTCGGAGGCGGTGCCTCGGAAGTCCATCGATACATTTGGTCAGAGGACTTCAATCTACCGTGGTGTAACAAGGCACAGATGGACTGGTAGATATGAAGCTCATTTATGGGACAACAGTTGCAGAAGAGAAGGGCAGACTCGCAAGGGAAGACAAGGTATACAACAGTTTCTTTACATTTTTTCGAATTTTCTTTCTCTAGGTGGTTATGACAAGGAAGAAAAAGCAGCTAGATCTTATGATTTGGCTGCATTGAAATATTGGGGATCGACAACAACTACAAATTTTCCTATTAGTAACTACGAGAAAGAATTAGAGGAGATGAAGCACATGACCAGACAGGAATATGTTGCATCTCTCAGAAGGAAAAGCAGTGGGTTTTCTCGAGGTGCATCTATTTACCGTGGAGTGACGAGACACCATCAACATGGAAGATGGCAAGCCAGGATTGGAAGAGTTGCAGGGAACAAAGATCTTTACTTGGGCACTTTCAGCACCCAAGAAGAAGCAGCCGAGGCCTACGACATCGCTGCCATAAAATTCCGTGGCCTGAATGCAGTAACAAACTTTGACATGAGCAGATATGATGTAAATAGCATAATTGAGAGCAGCACTTTGCCGATAGGGGGAGCTGCAAAGCGATTAAAAGAAGCTGAGCAGAACGAAATGAGTGTTGATCGTCGGAGGACGGATGATGACAACCTAACTTCCCACTTGACTAATGGAATAGACAATTACGCTGTCCACCATCATGGATGGCCAACGATAGCATTCCAGCAAGCTCAGCCTTTGAGCATGCACTATCCATACAGTCAGCAAAGAGGTTGGTGTAAGCAAGAACAGGATACAGTCGCATCCCACAGCTTGCAAGATCTTCATCAACTTCAATTGGGCAATACCCACAATTTCTTTCAGCCTTCTGTGCTTCATAACCTCATGAGCTTAGACTCCTCATCTTTGGAACATAGCTCTCAGTCTAATTCTGTTATCTACAATAGTGGAGGAGGAGGCAATGGAAGTGGTGGGACAAACAGCAGCTTTCAAGGAGTGATGGGTGGAAACAATGGTGGTTTTGTAATGCCTATGGCTACCGTCATCGCCGATCAGGCGGGTGGTTTTGGGGAGAATGATGTGAAGCAATTGGGTTATGACAACATTTTAGCCTCCGCAGATCCTTATCAAGGTAGGAATGCATATTATGTGTCACAGCAAACACCATCTGGTGTGGTGAAGAGTAATGGGTATGATCAGGGCAATTGGATGCCCACAGCAGTTCAAGCTCTCGCACCAAGGCAGAGCAATCTTGGGGTTTGTCATGGAGCTCCTATTTTCACGGTATGGAATGATGCATAA 2154 0.4721 MASMNNWLGFSLSPQELPSQSQNQAPPTVSRLGFNSDEVSGSDVSGDCFDLSSDSTAPSLHIPSLRHDGPFGILEAFNRTHQPSQDWNMNCDANFKTSSELSMLIGSSSSNQNHEEPKLEDFLGGHSFSDHEQKLAGCNAITTAYNSTGDYMFSNCSLQIPASASDGGGGSVNNNSIGLSMIKTWLRNQPAPPQPENKNDDVSSCGGASAANGGTLTNAQTLSLSMSTGSQSSSPLPLLTAAGGGSGEESFSSENKQTTSALDGKNGSSEAVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGIQQFLYIFSNFLSLGGYDKEEKAARSYDLAALKYWGSTTTTNFPISNYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVNSIIESSTLPIGGAAKRLKEAEQNEMSVDRRRTDDDNLTSHLTNGIDNYAVHHHGWPTIAFQQAQPLSMHYPYSQQRGWCKQEQDTVASHSLQDLHQLQLGNTHNFFQPSVLHNLMSLDSSSLEHSSQSNSVIYNSGGGGNGSGGTNSSFQGVMGGNNGGFVMPMATVIADQAGGFGENDVKQLGYDNILASADPYQGRNAYYVSQQTPSGVVKSNGYDQGNWMPTAVQALAPRQSNLGVCHGAPIFTVWNDA* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00200 717 MobiDBLite consensus disorder prediction 224 239 - -
Eupl12g00200 717 CDD AP2 285 366 IPR001471 GO:0003700|GO:0006355
Eupl12g00200 717 SMART rav1_2 400 464 IPR001471 GO:0003700|GO:0006355
Eupl12g00200 717 SMART rav1_2 286 370 IPR001471 GO:0003700|GO:0006355
Eupl12g00200 717 MobiDBLite consensus disorder prediction 224 276 - -
Eupl12g00200 717 ProSiteProfiles AP2/ERF domain profile. 286 364 IPR001471 GO:0003700|GO:0006355
Eupl12g00200 717 MobiDBLite consensus disorder prediction 187 212 - -
Eupl12g00200 717 SUPERFAMILY DNA-binding domain 399 460 IPR016177 GO:0003677
Eupl12g00200 717 MobiDBLite consensus disorder prediction 190 212 - -
Eupl12g00200 717 SUPERFAMILY DNA-binding domain 285 366 IPR016177 GO:0003677
Eupl12g00200 717 ProSiteProfiles AP2/ERF domain profile. 400 458 IPR001471 GO:0003700|GO:0006355
Eupl12g00200 717 CDD AP2 399 460 IPR001471 GO:0003700|GO:0006355
Eupl12g00200 717 FunFam AP2-like ethylene-responsive transcription factor 399 460 - -
Eupl12g00200 717 Pfam AP2 domain 400 450 IPR001471 GO:0003700|GO:0006355
Eupl12g00200 717 Pfam AP2 domain 286 356 IPR001471 GO:0003700|GO:0006355
Eupl12g00200 717 MobiDBLite consensus disorder prediction 246 276 - -
Eupl12g00200 717 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 110 548 - -
Eupl12g00200 717 Gene3D AP2/ERF domain 400 460 IPR036955 GO:0003700|GO:0006355
Eupl12g00200 717 Gene3D AP2/ERF domain 286 366 IPR036955 GO:0003700|GO:0006355
Eupl12g00200 717 MobiDBLite consensus disorder prediction 12 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00200 Eupl-Chr12 6415084 6418777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00200 117 716 AP2-EREBP Transcription Factor Family AT5G17430 43.636 7.79e-129 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Eupl12g00200 AP2 1.6e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00200 K09285 - nnu:104586090 976.467