Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00182 ATGGAGGATGATACTCAAGGGCGCGGTTTATTGGCTCATGCGCCTTCTTCTAGTTGCTTTGCATGTCTGGAGAATCCGTACACCCATCAAAAGATTGATATAAGGAAGAGAGACAGGATGCGTCGGTGGCTCTGTTGTACTTGTCAAGTAGAAGAGTCTTACCATCCACATGAAAATGAACACCTTAAAAGCCCAAGGAACCATGCAGAAGGGATCCAAAAAGGCCCAAAACAGTCTCCTCCAACCAAGACTGAAGTGCAAAAAGCACCACCACCTATTGAAGTGCCTGCATTGTCTTTAGATGAACTCAAAGAAAAGACGGACAATTTTGGATCAAAGTCTTTAATTGGTGAAGGGTCATATGGAAGAGTATATTATGCAACTTTAAACAGTGGAAAAGCTGTGGCTATAAAAAAGCTTGATGTTGCATCTGAACCTGAGTCCAATGTTGAGTTTTTGACACAGGTTTCCATGGTTTCCAGACTGAAACATGAAAATCTTGTTGAGTTGCTGGGTTACTGTGTGGAAGGCAATCTTCGTGTGTTAGCGTATGAGTTTGCAACCATGGGTTCTCTACATGACATTTTGCATGGAAGAAAAGGAGTCCAAGGTGCACAACCAGGTCCTGTACTTGACTGGATGCAGAGAGTGAGAATTGCGGTTGATGCAGCAAGGGGATTGGAGAACTTGCATGAGAAGATTCAACCATCTATAATACACAGGGATATCAGATCAAGCAACGTGCTCCTATTTGAAGACTTCAAAGCCAAAATCGCAGATTTTAACCTTTCAAATCAAGCTCCTGACATGGCTGCCCGTCTTCATTCTACTAGAGTTTTGGGAACCTTTGGTTATCATGCACCAGAGTATGCGATGACTGGTCAGTTGACGCAAAAGAGCGATGTATATAGCTTTGGTGTTGTTCTTTTGGAGCTTCTTACCGGTAGGAAACCCGTTGATCATACAATGCCTCGTGGGCAGCAGAGTCTCGTCACTTGGGCAACTCCAAGATTGAGCGAGGATAAGGTTAAACAGTGTGTAGATCCAAAGCTGAAGGGAGAGTATCCTCCAAAAGGAGTTGCAAAGCTGGCTGCTGTTGCAGCATTATGTGTGCAGTATGAATCTGAGTTCCGGCCAAACATGAGCATCGTTGTCAAGGCACTACAGCCGCTTCTCACGCAGAGGCCTCCTGCCCCAGCTCCCGAGATATGA 1212 0.4488 MEDDTQGRGLLAHAPSSSCFACLENPYTHQKIDIRKRDRMRRWLCCTCQVEESYHPHENEHLKSPRNHAEGIQKGPKQSPPTKTEVQKAPPPIEVPALSLDELKEKTDNFGSKSLIGEGSYGRVYYATLNSGKAVAIKKLDVASEPESNVEFLTQVSMVSRLKHENLVELLGYCVEGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPVLDWMQRVRIAVDAARGLENLHEKIQPSIIHRDIRSSNVLLFEDFKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYESEFRPNMSIVVKALQPLLTQRPPAPAPEI* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00182 403 SMART tyrkin_6 110 388 IPR020635 GO:0004713|GO:0006468
Eupl12g00182 403 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
Eupl12g00182 403 MobiDBLite consensus disorder prediction 56 70 - -
Eupl12g00182 403 Pfam Protein tyrosine and serine/threonine kinase 114 388 IPR001245 GO:0004672|GO:0006468
Eupl12g00182 403 ProSiteProfiles Protein kinase domain profile. 110 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl12g00182 403 Gene3D Transferase(Phosphotransferase) domain 1 188 397 - -
Eupl12g00182 403 SUPERFAMILY Protein kinase-like (PK-like) 88 388 IPR011009 -
Eupl12g00182 403 FunFam PTI1-like tyrosine-protein kinase 3 73 186 - -
Eupl12g00182 403 FunFam PTI1-like tyrosine-protein kinase 3 188 398 - -
Eupl12g00182 403 MobiDBLite consensus disorder prediction 56 94 - -
Eupl12g00182 403 ProSitePatterns Tyrosine protein kinases specific active-site signature. 238 250 IPR008266 GO:0004672|GO:0006468
Eupl12g00182 403 Gene3D Phosphorylase Kinase; domain 1 74 186 - -
Eupl12g00182 403 CDD STKc_IRAK 116 391 - -
Eupl12g00182 403 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 43 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00182 Eupl-Chr12 5858098 5870045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00182 44 395 Receptor kinase-like Gene Family AT4G02010 46.197 2.32e-93 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Eupl12g00182 PK_Tyr_Ser-Thr 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00182 K13436 - mof:131150424 688.723