Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00163 CAAAATTATATCATTTTGAGTGAGGCCGATATATGTCAACGTCAAGAGGAAGATATCACAAGGATATCTACTGTGCTTTCCATATCAAGAGTTTCGGCTAGTATCTTGCTCCGCCACTATAATTGGAGTGTCAGTAAAGTGCATGATGCTTGGTTTGCAGACGAAGAAAAAGTCCGCAAGGCTGTTGGTTTGTTAGAGAAAACAGTTATTCAAATTTCAAATGCTAGGGAACTGACTTGTGGGATCTGTTTCGAAAGCTATCCCTGTGATAGGATGACTGCTGCTGCATGTGGTCATCCCTTTTGTAGCACTTGCTGGACAGGTTACATTAGCACATCAATCAACGATGGTCCTGGATGTTTGATGTTGCGATGCCCTGATCCATCTTGTGCTGCTGCTGTTGGCCAAGACATGATCAATAAATTGGCTTCCGATGAAGATAAGGAAAAGTACTCCCGTTACCTTCTTAGATCTTATATTGAAGACAATAGAAAGACCAAATGGTGCCCTGCTCCAGGCTGTGATTATGCTGTGGATTTTGTTATTGGTAGTGGGAGCTATGATGTTTCTTGCAATTGCTCATATAGCTTTTGCTGGAATTGTACAGAGGAAGCTCATCGTCCAGTGGATTGCGGCACTGTTGCCAAGTGGATTTTGAAGAATAGTGCCGAGTCTGAAAACATGAATTGGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGGCCAATTGAGAAAAATCAGGGTTGTATGCATATCACATGCACACCTCCTTGTAAATTCGAGTTTTGCTGGCTGTGCCTTGGTGCATGGTCAGATCATGGTGAAAGGACGGGTGGTTTCTATGCATGTAATCGTTATGAGACAGCAAAGCAAGAGGGAGCGTATGATGAGACTGAGAGGAGAAGAGAGATGGCTAAAAACTCTTTGGAGAGGTACACTCATTATTATGAGAGATGGGCAACCAACCAGTCGTCGAGGCAAAAAGCACTAGCAGATTTACAGCAAATGCAAGCTGTGCAGATCGAGAAGCTCAGTGACAAACAATGCCAACCTGAGTCACAGCTCAAGTTCATAACAGAGGCCTGGCTACAGATTGTTGAATGCAGGCGTGTACTGAAGTGGACCTATGCTTATGGATATTACCTACCCGAGTATGAACATGCAAAGAGACTGTTCTTTGAATACTTGCAAGGTGAAGCTGAGTCTGGGTTAGAACGGCTTCATCAATGTGCGGAGAAGGAATTGCAAGCGTACCTCAATGCAGAAGGTCCATCCAAAGACTTCAATGAGTTCCGCACAAAGCTAGCCGGACTGACCAGTGTAACTCGGAATTACTTCGAGAACCTGGTCCAAGCACTAGAGAATGGTCTGTCAGATGTGGACCCCCACGGTGGCAGCAGCAGGACGGTGAGCTCGAAGAGCATGGGAGGGGGCAGCAAAGGGAGAGGTGGAAGGGGCAAAGGAACAACCTCCAGGTCTGGTGGTCCCGGTCGAAGCCTGGATGATTCAGGCCATTGGTCTTGTGAGCACTGCACCTATGCCAATGTCAGGTCCGCCACCACTTGCCAGATGTGCCACCAGCACCGGTAA 1596 0.4637 QNYIILSEADICQRQEEDITRISTVLSISRVSASILLRHYNWSVSKVHDAWFADEEKVRKAVGLLEKTVIQISNARELTCGICFESYPCDRMTAAACGHPFCSTCWTGYISTSINDGPGCLMLRCPDPSCAAAVGQDMINKLASDEDKEKYSRYLLRSYIEDNRKTKWCPAPGCDYAVDFVIGSGSYDVSCNCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQEGAYDETERRREMAKNSLERYTHYYERWATNQSSRQKALADLQQMQAVQIEKLSDKQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEYEHAKRLFFEYLQGEAESGLERLHQCAEKELQAYLNAEGPSKDFNEFRTKLAGLTSVTRNYFENLVQALENGLSDVDPHGGSSRTVSSKSMGGGSKGRGGRGKGTTSRSGGPGRSLDDSGHWSCEHCTYANVRSATTCQMCHQHR* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00163 531 CDD RING-HC_ARI6-like 77 138 - -
Eupl12g00163 531 FunFam RBR-type E3 ubiquitin transferase 74 163 - -
Eupl12g00163 531 Pfam Ariadne domain 298 459 IPR045840 -
Eupl12g00163 531 ProSitePatterns Zinc finger RanBP2-type signature. 508 527 IPR001876 -
Eupl12g00163 531 Gene3D - 502 531 - -
Eupl12g00163 531 MobiDBLite consensus disorder prediction 459 504 - -
Eupl12g00163 531 SUPERFAMILY Ran binding protein zinc finger-like 504 531 IPR036443 -
Eupl12g00163 531 ProSiteProfiles TRIAD supradomain profile. 76 289 IPR044066 -
Eupl12g00163 531 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 161 IPR013083 -
Eupl12g00163 531 SMART zf_4 506 530 IPR001876 -
Eupl12g00163 531 CDD BRcat_RBR_ANKIB1 156 220 - -
Eupl12g00163 531 MobiDBLite consensus disorder prediction 464 478 - -
Eupl12g00163 531 SUPERFAMILY RING/U-box 230 278 - -
Eupl12g00163 531 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 26 377 IPR031127 GO:0004842|GO:0016567
Eupl12g00163 531 Gene3D - 207 462 - -
Eupl12g00163 531 ProSiteProfiles Zinc finger RanBP2 type profile. 504 531 IPR001876 -
Eupl12g00163 531 Pfam IBR domain, a half RING-finger domain 149 211 IPR002867 GO:0008270
Eupl12g00163 531 Pfam IBR domain, a half RING-finger domain 228 276 IPR002867 GO:0008270
Eupl12g00163 531 SUPERFAMILY RING/U-box 76 161 - -
Eupl12g00163 531 SUPERFAMILY RING/U-box 149 218 - -
Eupl12g00163 531 FunFam RBR-type E3 ubiquitin transferase 212 462 - -
Eupl12g00163 531 SMART ibrneu5 215 285 IPR002867 GO:0008270
Eupl12g00163 531 SMART ibrneu5 149 211 IPR002867 GO:0008270
Eupl12g00163 531 CDD Rcat_RBR_ARI7-like 234 288 - -
Eupl12g00163 531 ProSiteProfiles Zinc finger RING-type profile. 80 124 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00163 Eupl-Chr12 5271720 5300540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00163 1 531 ARIADNE family AT1G65430 76.648 0.0 868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00163 K11968 - nnu:104605183 981.859