Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00160 ATGGGAAGTTGCTTTTCTTCTCCTGCAAATTCGGCTCTCTTCAAGAGACCAGAGAATCTCAAATCGGTATCTGATAACGATGATAATCGATTCCAAAAATCCGTGGCCGTTCGATTGGCATCCATTCTTAAGAATCCAAAGGGAGACAACATTTCCCTGCGGTACCTTCTTGGGAAGGAGCTTGGGAGGGGCGAATTCGGCATCACGTATCAGTGCACGGACATCGAGACAGGAGAAGCCCTAGCTTGCAAGTCGATCTCAAAGAGTAATCTCAAGACAGAGATTGATATTGAGGATGTGAGGCGGGAGGTAGAGATAATGAGTCATCTTCCAGAGCACCCGAACATCGTGAGGTTGAAGGAGGCTTATGAAGATGGAGAAGCTGTCCATCTCGTGATGGAACTCTGCGAGGGTGGGGAGCTCTTTGATCGGATTGTCGCACGTGGACACTACACGGAACGAGCTGCTGCTATCATCACTAAGACAATGGTCGAGGTTGTCCAGGTTTGCCATGAGAACGGGGTGATGCATCGAGACCTAAAGCCTGAGAATTTCTTGTTTGAAAATATAGAGGAAAATTCTCCATTGAAAGCAATTGATTTTGGCCTCTCCGTATTTTTCGTTCCCGGCCAGCATTTCAGTGAAATCGTTGGAAGTCCATTTTACATGGCCCCAGAGGTCCTGAGACGGGATTATGGACCAGAAATAGATGTATGGAGTGCAGGGGTTATCCTTTACATTTTGCTATGTGGAGTCCCACCTTTTTGGGCAGAAACTGAAGAGGGAATTGCACAAGCAATAGTTCAGTCTGTTGTAGATTTCGAGAGGGATCCTTGGCCAAAGGTTTCTGAGGATGCAAAGGATCTTGTAAGGAGTATGCTCGAGCCGAATCCCTACAGTCGCTTGACAGCTCAAGAAGTTCTTGAACATCCTTGGTTACAAGACGCCAATAATGTCCCCAATGTTCCTCTGGGAGAAAATGTCAGAGCGAGGATTAAGCAGTTCTCATTGATGAACAAGTTTAAGAAGAGAGTTCTGAGAGTCGTAGCAGACAGCTTGCCAACAGAGCAAGTAGCTGGGATTAAGAAGATGTTCCATCTGATGGATACTGACAACAACGGCGACTTAACTTTCGAAGAACTTAAAGATGGGCTCTATACGATTGGGCAGCCCGTTCCTGATCTGGATGTTCAAATGTTAATGGATGCGGCAGACGTTGACGGAAGCGGCACTCTGAACTGTGATGAGTTTGTCACAATCTCCGTTCACTTGAAAAGAATTGGCAGTGGCGATAGCAGCAGCGACGAGCATTTGTGTAAAGCATTTAATTACTTCGACAAGAATGAGAGCGGGTTTATCGAGTTTGAGGAGTTGAGAGAAGCCTTGCTAGAGGAAGACCTCGGTACCGACAATGAGCAGGTTATCGGAGACATCATCTGTGATGTTGATGCAGACAAGGACGGTCGAATCAGTTACGAGGAATTCAAGGCAATGATGAAAGCTGGCATGGATTGGAGGATGGCTTCTCACCAATATTCGAGAGCAATGTTAAATACACTTAGCTTCAAATTGTTCAACGACACATCACTGCAATTGAGAAAATAA 1605 0.4586 MGSCFSSPANSALFKRPENLKSVSDNDDNRFQKSVAVRLASILKNPKGDNISLRYLLGKELGRGEFGITYQCTDIETGEALACKSISKSNLKTEIDIEDVRREVEIMSHLPEHPNIVRLKEAYEDGEAVHLVMELCEGGELFDRIVARGHYTERAAAIITKTMVEVVQVCHENGVMHRDLKPENFLFENIEENSPLKAIDFGLSVFFVPGQHFSEIVGSPFYMAPEVLRRDYGPEIDVWSAGVILYILLCGVPPFWAETEEGIAQAIVQSVVDFERDPWPKVSEDAKDLVRSMLEPNPYSRLTAQEVLEHPWLQDANNVPNVPLGENVRARIKQFSLMNKFKKRVLRVVADSLPTEQVAGIKKMFHLMDTDNNGDLTFEELKDGLYTIGQPVPDLDVQMLMDAADVDGSGTLNCDEFVTISVHLKRIGSGDSSSDEHLCKAFNYFDKNESGFIEFEELREALLEEDLGTDNEQVIGDIICDVDADKDGRISYEEFKAMMKAGMDWRMASHQYSRAMLNTLSFKLFNDTSLQLRK* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00160 534 Gene3D - 325 502 - -
Eupl12g00160 534 FunFam Calcium-dependent protein kinase 1 57 140 - -
Eupl12g00160 534 PANTHER SERINE/THREONINE-PROTEIN KINASE 45 495 - -
Eupl12g00160 534 ProSiteProfiles Protein kinase domain profile. 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl12g00160 534 ProSiteProfiles EF-hand calcium-binding domain profile. 356 391 IPR002048 GO:0005509
Eupl12g00160 534 Gene3D Transferase(Phosphotransferase) domain 1 141 324 - -
Eupl12g00160 534 ProSitePatterns EF-hand calcium-binding domain. 405 417 IPR018247 -
Eupl12g00160 534 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Eupl12g00160 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Eupl12g00160 534 FunFam calcium-dependent protein kinase 13 141 321 - -
Eupl12g00160 534 Gene3D Phosphorylase Kinase; domain 1 56 140 - -
Eupl12g00160 534 ProSitePatterns EF-hand calcium-binding domain. 369 381 IPR018247 -
Eupl12g00160 534 SUPERFAMILY EF-hand 342 514 IPR011992 -
Eupl12g00160 534 Pfam Protein kinase domain 57 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl12g00160 534 ProSiteProfiles EF-hand calcium-binding domain profile. 470 505 IPR002048 GO:0005509
Eupl12g00160 534 CDD EFh 440 500 IPR002048 GO:0005509
Eupl12g00160 534 SUPERFAMILY Protein kinase-like (PK-like) 54 325 IPR011009 -
Eupl12g00160 534 SMART serkin_6 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl12g00160 534 ProSitePatterns EF-hand calcium-binding domain. 483 495 IPR018247 -
Eupl12g00160 534 CDD EFh 361 420 IPR002048 GO:0005509
Eupl12g00160 534 ProSiteProfiles EF-hand calcium-binding domain profile. 392 427 IPR002048 GO:0005509
Eupl12g00160 534 Pfam EF-hand domain pair 436 500 IPR002048 GO:0005509
Eupl12g00160 534 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Eupl12g00160 534 FunFam Calcium-dependent protein kinase 7 322 503 - -
Eupl12g00160 534 SMART efh_1 437 465 IPR002048 GO:0005509
Eupl12g00160 534 SMART efh_1 396 424 IPR002048 GO:0005509
Eupl12g00160 534 SMART efh_1 474 502 IPR002048 GO:0005509
Eupl12g00160 534 SMART efh_1 360 388 IPR002048 GO:0005509
Eupl12g00160 534 CDD STKc_CAMK 54 312 - -
Eupl12g00160 534 Pfam EF-hand domain pair 373 421 IPR002048 GO:0005509
Eupl12g00160 534 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00160 Eupl-Chr12 5189044 5214952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00160 1 527 EF-hand Containing Proteins AT2G31500 66.111 0.0 730
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Eupl12g00160 Pkinase 4.1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00160 K13412 - vvi:100250838 789.645