Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00152 ATGGGTCCAGATTTAGTTATTGTTTGGTCCGTTCCCAAAAAAATGGAACTGGAACCCGTGTTTTTGGTTTCGGTGGTACAAATTGATACCCTTAACCATATCTCTCATGGCGGTCTAAGGATAGTTGTCGTTGAATCCGTGATGGATTCAAAACATTCCGGTGAAGGGGATGGACCTGGTCCCAGGCCCGTTCGCACGAGCGATAGGCTTCGGAGACGGCCGAACATATACAGTCGCGCATACCTGTATTATACTCCCACCATTATTCGCAAGAAGAACAAGACCAAGAGTCGCACTGCAGCTTCTCAGATTGCCAAAATGTTGCGTCCCGGGAATCGTCCGGTGCGCTCCTCTCCCACTACCAATTCAGTTGGGACCAACCTTCGGCGTTCTACCAGAAAGAGGAAGATGTCTAGTACTCTGGAGGGTTACGACACAGATAGCTCGGCAACGGAGGATGATGACCTAATGAGGCCCAAGTTTCGTTCTTCTAGAAGGAAACTTGAAAATAGTGGTAGTCAAGATGAATTGTCAACCTCACCAAGGCGTAAAAAGATCCCCAAGACCAAATCGTTTCCTCGCCGTGAAGGACTACGACCTCGACGTTCGAAAATGGTGGCAAGAGAACAATCATATCCAGAATCTGATGATGACCAGGGTACCTCGGAAGAGCAGCTTGGCCAAGATGAAACAGAAAATGGGAATGATGAGGGGGATGGTGGGGATGAGGGTGAGGGTGAGGACGAGGGTGGGGATGAAGGAGAGGAAGATGGAGATGATGAAGAGGGTGAAGAAGAACAGGATGGAAGGAGGCGATACGATCTTCGTAATCGAGCAGAGGTTCGCAGATTATCTCCAGAGAAGGAAGGGAAACAAAGGCAACGATCCCCTCGCAGAATATTACATCAAGGAATGGGAACCAAGAGTAGCAGGGATGTAAGGAGGGGTGGTTCTCGAGTTCATAAGAGACATCGCTTAACGAGAACTGAAGATTCTGATGACTCTCTTCTTGTGGATGAGCTCGACCAAGGACCAGCTATCCCTTGGGCACGAGGTGGAAGTAGAAGTGGTCCACCTTGGCTTTTGGGGGGATTAGACATGCATGGAACAACAGCATGGGGACTGAATGTTGCTGCTTCTGGTTGGGGTCATCAGAGTGATGCTTTCGCTTCTCTGACTTCTGGGGTTCAAACTGCTGGACCAAGTTCCAAGGGAGGGGCGGATATTCAACCTTTACAGGTTGATGAAAGTGTAAGTTTTGATGACATCGGTGGACTTTCAGAATACATTGATGCTTTGAAAGAAATGGTATTTTTCCCTTTACTCTATCCAGATTTCTTTGCAAATTACCACATCACTCCTCCAAGAGGGGTCTTGTTATGTGGTCCCCCTGGCACTGGAAAGACATTGATTGCAAGAGCATTAGCTTCTGCTGCATCAAAGGCGGGTCAGAAGGTTAGTTTTTACATGCGCAAGGGAGCTGACGTACTCAGCAAATGGGTTGGTGAGGCTGAGAGACAGCTTAAACTACTATTTGAAGAAGCTCAAAGGAACCAGCCGTCCATTATCTTCTTTGATGAAATAGATGGCCTTGCTCCTGTTAGATCAAGCAAGCAAGAGCAGATTCACAATTCTATTGTGTCAACTTTACTTGCTTTGATGGATGGTCTTGATTCTCGTGGACAAGTTGTTCTGATTGGAGCTACAAACAGGATCGATGCCATTGATGGAGCCCTGCGTCGCCCTGGTCGATTTGATCGTGAATTCAATTTTCCTTTACCTGGTCTTGAGGCACGTGCTGAAATATTAGATATCCACACTCGGAAATGGAAGCAGCCCCCTTCAAAGGAGCTGAAGATGGAACTTGCAGCTAGTTGTGTAGGATACTGTGGAGCTGATTTAAAAGCTCTGTGCACAGAAGCTGCCATTCGTGCTTTCCGTGAAAAATATCCCCAAGTTTACACCAGTGATGACAAGTTTTTGATCGATGTTGATTCAATAAAGGTTGAAAAATATCATTTCCTAGAAGCCATGTCAACAATTACTCCTGCTGCTCACAGAGGCTCTGTCGTGCACTCAAGGCCATTGTCTTTAGTTGTTGCACCATGTTTACAAAGGCATTTCCAGAAAGTCATGGATCATATATCTGAAAATTTTCCCACCCTTGCAGCTTCGTCAGATGTGAGCAAGTCTTCTATGTTACCCTATGGTTCTGCAGTTCCTCTTGTGTATAGACCCCGGCTTCTGATATGTGGTGTTGAAGGCGTAGGCGTGGACCATATTGGGCCTGCGGTTTTACATGAACTGGAGAAATTTCCCGTTCATTCTCTAGGACTTCCATCTCTTCTTTCTGATCCTAGTGCAAAGACACCAGAGGAGGCGTTGGTACACATATTTGGTGAAGCGAGGAGAACTACACCCTCGATACTCTATTTACCTCAATTCCATCTTTGGTGGGAGACTGCACACGAGCAGCTTAGGGCGGTCCTGCAGACTCTTTTGGAGGAATTGCCATCTGATTTTCCGATATTATTACTTGGAACATGCTCGCGTCAATTTGCTGATCTAGATGTGGAGGCTTATTCAGTATTTGCTCACCGTAATGTGTATCAAGTGGAGAAACCAACATCAGTGGACAGGTCAATGTTCTTTGGGCGGTTGGTTGAAGCTGTTTTCTCTATTCCATCTGAAGAGACCACAAGCAAATCCCAGGAGCCAAAATCCCTTCCTGAACTCCCCAAGGTACCAAAGGCCACAAGTGGTCCAAAGGCCTCAGAGTTAAAAGCCAAGGCAGAAGCTGAGCAGCATGCCCTTCGCCGACTGCGGATGTGTCTTCGGGATATATGCAATCGGATTCTATATGATAAACGGTTCCTTGCTTTTCATTATCCAGTCATGGATGAGGATGCACCAAATTATCGCTCAATTGTCCAGAACCCCATGGACATGGCTACTCTGCTGCAACGTGTAGACTGTGGGCACTATGTTACATGTTCAGCATTCCTGCAAGATGTTGACCTCATCTTGACCAATGCAAAGGCTTATAATGGCGATGATTACAATGGAGCTAGGATCGTTAGCAGAGCTTATGAACTTCGAGATGCAGTGCAAGGAATGTTGTCGCAGATGGACCCAGCACTGGTCACATTCTGTGACAAAATTGTGGCCCAAGGGGGGCCAGTGCGTGTGCCGGATGACATTGGGGACTTTCTTTTCCCACCAACTCCTGTTGTTCAACTGGCAACTGTTACTAGAGTGAGTGCCCGACTTCGTAATGTCCAACCTGAGGTTAATTTGAGTCAAAGTTATGAAGCATTGAGGCGGCCAAAGAAGAGTGTTGACACTGAACAAGCAGGTGGCAATCCAGGTTTAGCTGTAGAAGACAAGTCACGGCCCGCAGAATTGGGGCCGTCAAAGCCAGCATCCATTCAGCCAGCACTATCTGAAGAACCTGAGACAAATGGTGTGGCCTCGGAAAGGCCGGAGACTTCTCCTGCCATTGATGAGCAATTGGAAACTTCTGGAAATTCATCTTGCCCTGCCACGGAAAGCCGATCCCGGGAAGATGCCATAATGACGGATGGAGATATTTCCAGCCAAGTCGATTCTATCAAGCAGCATTTGGTGGAGCGCACTGAAGGCTACGATGTACCACAGCTTGAGAGGCTTTATACGCGCCTGGTAAAAGGTGTGCTTGAAACCATAGGAAAGGAAGTTGGGGAAGATCACAAGCCCTCAGTTTTGATATTTTTGTCGAGGTTTGCTGAGAATGAAGGGAATTTCTGA 3786 0.4707 MGPDLVIVWSVPKKMELEPVFLVSVVQIDTLNHISHGGLRIVVVESVMDSKHSGEGDGPGPRPVRTSDRLRRRPNIYSRAYLYYTPTIIRKKNKTKSRTAASQIAKMLRPGNRPVRSSPTTNSVGTNLRRSTRKRKMSSTLEGYDTDSSATEDDDLMRPKFRSSRRKLENSGSQDELSTSPRRKKIPKTKSFPRREGLRPRRSKMVAREQSYPESDDDQGTSEEQLGQDETENGNDEGDGGDEGEGEDEGGDEGEEDGDDEEGEEEQDGRRRYDLRNRAEVRRLSPEKEGKQRQRSPRRILHQGMGTKSSRDVRRGGSRVHKRHRLTRTEDSDDSLLVDELDQGPAIPWARGGSRSGPPWLLGGLDMHGTTAWGLNVAASGWGHQSDAFASLTSGVQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFANYHITPPRGVLLCGPPGTGKTLIARALASAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGLEARAEILDIHTRKWKQPPSKELKMELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSIKVEKYHFLEAMSTITPAAHRGSVVHSRPLSLVVAPCLQRHFQKVMDHISENFPTLAASSDVSKSSMLPYGSAVPLVYRPRLLICGVEGVGVDHIGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFHLWWETAHEQLRAVLQTLLEELPSDFPILLLGTCSRQFADLDVEAYSVFAHRNVYQVEKPTSVDRSMFFGRLVEAVFSIPSEETTSKSQEPKSLPELPKVPKATSGPKASELKAKAEAEQHALRRLRMCLRDICNRILYDKRFLAFHYPVMDEDAPNYRSIVQNPMDMATLLQRVDCGHYVTCSAFLQDVDLILTNAKAYNGDDYNGARIVSRAYELRDAVQGMLSQMDPALVTFCDKIVAQGGPVRVPDDIGDFLFPPTPVVQLATVTRVSARLRNVQPEVNLSQSYEALRRPKKSVDTEQAGGNPGLAVEDKSRPAELGPSKPASIQPALSEEPETNGVASERPETSPAIDEQLETSGNSSCPATESRSREDAIMTDGDISSQVDSIKQHLVERTEGYDVPQLERLYTRLVKGVLETIGKEVGEDHKPSVLIFLSRFAENEGNF* 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00152 1261 Gene3D - 594 679 - -
Eupl12g00152 1261 PRINTS Bromodomain signature 986 1004 IPR001487 GO:0005515
Eupl12g00152 1261 PRINTS Bromodomain signature 1004 1023 IPR001487 GO:0005515
Eupl12g00152 1261 PRINTS Bromodomain signature 970 986 IPR001487 GO:0005515
Eupl12g00152 1261 SMART bromo_6 938 1045 IPR001487 GO:0005515
Eupl12g00152 1261 SMART AAA_5 454 595 IPR003593 GO:0016887
Eupl12g00152 1261 MobiDBLite consensus disorder prediction 50 71 - -
Eupl12g00152 1261 MobiDBLite consensus disorder prediction 898 927 - -
Eupl12g00152 1261 MobiDBLite consensus disorder prediction 151 183 - -
Eupl12g00152 1261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 743 891 IPR027417 -
Eupl12g00152 1261 CDD Bromo_AAA 938 1048 - -
Eupl12g00152 1261 Gene3D - 930 1057 IPR036427 GO:0005515
Eupl12g00152 1261 ProSiteProfiles Bromodomain profile. 961 1023 IPR001487 GO:0005515
Eupl12g00152 1261 PANTHER AAA DOMAIN-CONTAINING 93 1054 IPR045199 -
Eupl12g00152 1261 MobiDBLite consensus disorder prediction 216 264 - -
Eupl12g00152 1261 FunFam ATPase family, AAA domain-containing 2 416 599 - -
Eupl12g00152 1261 Pfam Bromodomain 952 1019 IPR001487 GO:0005515
Eupl12g00152 1261 MobiDBLite consensus disorder prediction 1101 1198 - -
Eupl12g00152 1261 Gene3D - 416 686 IPR027417 -
Eupl12g00152 1261 MobiDBLite consensus disorder prediction 114 128 - -
Eupl12g00152 1261 MobiDBLite consensus disorder prediction 191 215 - -
Eupl12g00152 1261 MobiDBLite consensus disorder prediction 265 296 - -
Eupl12g00152 1261 Pfam AAA+ lid domain 621 657 IPR041569 -
Eupl12g00152 1261 FunFam ATPase family AAA domain-containing protein 2B 594 679 - -
Eupl12g00152 1261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 683 IPR027417 -
Eupl12g00152 1261 MobiDBLite consensus disorder prediction 92 333 - -
Eupl12g00152 1261 Pfam ATPase family associated with various cellular activities (AAA) 458 593 IPR003959 GO:0005524|GO:0016887
Eupl12g00152 1261 ProSitePatterns AAA-protein family signature. 563 581 IPR003960 GO:0005524|GO:0016887
Eupl12g00152 1261 FunFam ATPase family AAA domain-containing protein 930 1058 - -
Eupl12g00152 1261 SUPERFAMILY Bromodomain 923 1049 IPR036427 GO:0005515
Eupl12g00152 1261 MobiDBLite consensus disorder prediction 1167 1184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00152 Eupl-Chr12 4897257 4938881 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00152 404 658 Calmodulin-binding Proteins AT3G56690 36.293 1.19e-40 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00152 K22531 - nnu:104605280 1846.25