Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00135 ATGGTGAACGAGCTTCGAATTCTTGATTCTAACATCTGGAAGGCTTGCGCGGGAAGTTCAATTCAAATCCCGATTGTTGATTCTTGGGTTTACTACTTCCCCCAAGGTCACGCCGAGCAAGCCTTGTCTCCTCCTGATTTCTCATTATCTATCTGTTTCAAACCCATGATTCTTTGTCGAGTCGACTCCATTCTTTTCCTCGCGAATCCTCACTCCGACGAGGTTTTTGCTAAGATCCGTCTCGAACCTTTTGATGGATATCGTGCAGGGATCTTCCGTACCCCGCTGACTCTGGGAATTTCGAACAGGGAGAACAATGACGGCGAGGAGAAGGTTCTTTCGTTCGCGAAGATCCTCACCTCGAGTGATGCAAACAATGGTGGAGGATTCACGGTCCCGAAGTTTTGCGCTAATTCGATCTTTCCGGCCCTGAATTTCAACGATGTCCCACCACAGCAGACGATTTCGGTGCGTGACGTTCATGGAGTGCTTTGGAATTTCCACCACATTTACCGTGGTTCCCCTCTACGCCATCTCCTAACGACTGGATGGAGTAAGTTTGTGGACCAGAAGAAACTCATCGGTGGGGATTCTGTCATTTTCATGAAGAATCGGACTGGTGATCTATCTGTGGGCATCCGACGGTCGACGAGGTCATCAAGCGTGACTGTGGATAGTCCACGGTGGCAGACTGCGCTAGCGGCGAAATTGGAACAGGAGTTGAGTGGCGGAGAGTCATTCTGGAGGAGTAACAGGGGTAGGGTTTCTGCTGAGTCAGTCAGGGAGGCTGCTGAACTAGCGGGAACCAGCAGGCCTTTCGATATTATCTATTATCCAAGGGCGGGGTTACTGGATTTTATTGTGGAAGCACAGACGATTGAGGAATCGAGAAGGTTTTGGAAGGCTGGGATGAGGGTTAAAATGTCAGTGAAGACGGAGGACTCGTCTAGGATGACATGGTTCCAGGGGACAGTTTCTTCCGCTGCCGTTCCAGATCACGGGCCATGGTGTGGCTCTCCCTGGCGCATGCTTCAGGTTACTTGGGATGAGCCTGAAGTTTTGGAGAATGTAAAGGGAGTGAGCCCTTGGCAAGTTGAATTGGTTGCAGGCATACCACCACTTCAGACACCATTCCCCCCCATGAAGAAACTCAGAGTTCCCCAGACTCCTGAGTTGCCGACTGATGGAGAAGGGAGCATGCAGGGAGCCAGGCATAATAGTACTGAACTGACCATTGCCAACCGAACCAGCGCTAACTCAATGACCAAAGCTGGTGGTGGTTCATTTCGGTTATTTGGTAAGACCATCCAGATAAACCAGCCTGATGCGGGTGGGTGA 1338 0.506 MVNELRILDSNIWKACAGSSIQIPIVDSWVYYFPQGHAEQALSPPDFSLSICFKPMILCRVDSILFLANPHSDEVFAKIRLEPFDGYRAGIFRTPLTLGISNRENNDGEEKVLSFAKILTSSDANNGGGFTVPKFCANSIFPALNFNDVPPQQTISVRDVHGVLWNFHHIYRGSPLRHLLTTGWSKFVDQKKLIGGDSVIFMKNRTGDLSVGIRRSTRSSSVTVDSPRWQTALAAKLEQELSGGESFWRSNRGRVSAESVREAAELAGTSRPFDIIYYPRAGLLDFIVEAQTIEESRRFWKAGMRVKMSVKTEDSSRMTWFQGTVSSAAVPDHGPWCGSPWRMLQVTWDEPEVLENVKGVSPWQVELVAGIPPLQTPFPPMKKLRVPQTPELPTDGEGSMQGARHNSTELTIANRTSANSMTKAGGGSFRLFGKTIQINQPDAGG* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00135 445 Gene3D - 112 217 IPR015300 -
Eupl12g00135 445 SUPERFAMILY DNA-binding pseudobarrel domain 111 219 IPR015300 -
Eupl12g00135 445 Pfam B3 DNA binding domain 115 216 IPR003340 GO:0003677
Eupl12g00135 445 CDD B3_DNA 114 215 IPR003340 GO:0003677
Eupl12g00135 445 Pfam Auxin response factor 263 345 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Eupl12g00135 445 Gene3D - 300 371 - -
Eupl12g00135 445 ProSiteProfiles B3 DNA-binding domain profile. 115 217 IPR003340 GO:0003677
Eupl12g00135 445 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 410 IPR044835 GO:0003677|GO:0006355|GO:0009725
Eupl12g00135 445 FunFam Auxin response factor 113 217 - -
Eupl12g00135 445 SMART B3_2 115 217 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00135 Eupl-Chr12 4546915 4548808 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00135 6 388 B3 DNA Binding Superfamily AT1G77850 47.837 1.28e-123 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Eupl12g00135 B3 2.9e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00135 - - nnu:104588718 538.88