Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00117 ATGCGTGACGTTCATGGAGTGCTTTGGAATTTCTGCCACGTTTACCGTGGTTCCCCTCTACGCCATCTCCTAACGACTGGATGGAGTAAGTTTGTGACCCAGAAGAATCTCATCGCTGGGGATTCAGTGATTTTCATGAAGAATCGGACTGGTGACCTATCTGTGGGCATCCGACGGGCGACGAGGTCAAGCGTGACTGTGGATAGTCCACGGTGGCAGATGGCGCAAGCGGCGAAATTGGAACAGGAGTTGAGTAGAGGAGAGTCATGCTGGAGGAGTAACAGGGGTAGGGTTTCTGCTGAGTCAGTCAGGGAGGCTGCTGAGCTAGCGGGAACCAATAGGCCTTTCGAGATTATCTATTATCCAAGGGCGGGGTTACTGGACTTTATTGTGGAAGCACAGAGGGTTGAGGAATCATCGAGAAGGTCTTGGAAGGCTGGGATGATGGTTAAAATGTCAGTGAGGACGGAGGACTCGTCTAGGATGACGTGGTTCCAGGGGACAATTTCTTCCGCTGCAGTTCCAGATCACGGGCCATGGTGTGACTCTCCCTGGCGCATGCTTCAGGTTATTTGGGATGAGCCTGAAGTTTTGCGGAATGTAAAGAGTGTGAGCCCTTGGCAACTTGAATTGGTCACGGAGAAACTCAGAGTTCCCCAGAATCCTGAGTTGCCGACTGATCGAGAAGGGAGCATGTTCTTTCCCATGTCGGGATTAACTAATTCAATGATGGGGCACTTGGAGTACCCTTCATTGTTCAGTTATACCACTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATTCCACTTTTCCTGCTGGCATGCAGGTAGCTAATAGTACCCATCACATGTACTCTGAACATCTAGATGGAAACATGGATCCGAAGTTGAGTTCAGTGTCTACTGAACTGACCATTGGGAGTACAGCACAAGCCGACAACTCATTGAAGCATAGCCGGGGCAGTAGCACAGAGCTTCCTGCCAACCGAACCTCTAACTCAATGACCAAAGCTGGTGGTGGTTCCTTTCGGTTATTTGGTAAGACCATCCAGATAAACCAGCCTGCTGTGTCGGGCGGGTGA 1083 0.5078 MRDVHGVLWNFCHVYRGSPLRHLLTTGWSKFVTQKNLIAGDSVIFMKNRTGDLSVGIRRATRSSVTVDSPRWQMAQAAKLEQELSRGESCWRSNRGRVSAESVREAAELAGTNRPFEIIYYPRAGLLDFIVEAQRVEESSRRSWKAGMMVKMSVRTEDSSRMTWFQGTISSAAVPDHGPWCDSPWRMLQVIWDEPEVLRNVKSVSPWQLELVTEKLRVPQNPELPTDREGSMFFPMSGLTNSMMGHLEYPSLFSYTTFPAGMQGARQDSTFPAGMQVANSTHHMYSEHLDGNMDPKLSSVSTELTIGSTAQADNSLKHSRGSSTELPANRTSNSMTKAGGGSFRLFGKTIQINQPAVSGG* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00117 360 MobiDBLite consensus disorder prediction 309 339 - -
Eupl12g00117 360 MobiDBLite consensus disorder prediction 309 340 - -
Eupl12g00117 360 SUPERFAMILY DNA-binding pseudobarrel domain 1 64 IPR015300 -
Eupl12g00117 360 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 352 IPR044835 GO:0003677|GO:0006355|GO:0009725
Eupl12g00117 360 Gene3D - 144 216 - -
Eupl12g00117 360 Gene3D - 1 61 IPR015300 -
Eupl12g00117 360 Pfam B3 DNA binding domain 1 60 IPR003340 GO:0003677
Eupl12g00117 360 Pfam Auxin response factor 106 189 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Eupl12g00117 360 ProSiteProfiles B3 DNA-binding domain profile. 1 61 IPR003340 GO:0003677
Eupl12g00117 360 CDD B3_DNA 1 59 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00117 Eupl-Chr12 4085760 4087270 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00117 1 359 B3 DNA Binding Superfamily AT1G77850 39.332 1.25e-78 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Eupl12g00117 Auxin_resp 3.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00117 - - ming:122081791 421.009