Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00101 ATGCCGCCTCCGAACAAGTCGAACATGGTTGCAGAGCAAAGCCCTAGGTCTCCGACCCACGGCGGGAAGGAGATGGACGACGAAGACGGATCACCTTCGCACAATCTCTGGGTCGGAAACCTTCCTAGCGAAATTACCGATTCTGATCTGATGGATATCTTCGCCAAGTACGGCGCGCTCGATAGTGTCACCACCTACTTGTCGAGGAACTATGCGTTCCTCTACTTCAAGCATCTTGAAGACGCACGTGCCGCCAAGGACGCTCTCCAGGGTTTTGTCCTACGCGGCAACCCGATCAAGATCGAGTTTGCTCGACCGGCTAAACCTGGCAAACATTTGTGGGTAGGTGGAATTAGTACATCTGTTACTAAGGAACAGCTAGAAGAAGAATTTTTGAAGTTTGGAAAAATTGAGGACTTTAAATTCCTCAGGGACCGAAACTCGGCACTTATTGACTATTTTAGATTAGAAGATGCTGCTGCAGCATTGAAAAATCTGAATGGAAAACGTTTAGGTGGTGAGCAAATACGTGTGGATTTTCTGAGGTCACAACCTTCAAGAAGAAGGGAAAATTGGTCGGACTTCCATGACTCAAGGGATGGACATTTTAACAATAGACGGAGCATGGGACTTACAGAGCCCTTATGGATGCCACCAGATGCGATGAGAAATTTCCCCGAGTCCTCCCAGTTTGGGCATAAAAGGCATTCGCCATCTCAACCTTCAGGGGGCCGGAGAGGAGATGGACAACCGAGCAAAGTATTGTGGATAGGATATCCTCCTTCGGTTCAGATTGATGAGCACATGCTTCACAATGCCATGATCCTATTTGGTGAAATTGAAAGAATCAAAAGTTTCCCATCAAGGAATTATTCATTTGTAGAGTTCAGAAGTGTAGATGAAGCTCGGTGTGCCAAAGAAGGCCTGCAAGGCCGTCTTTTTAATGATCCTAGGATACAGATTCTATTTTCAAGCAGCGAATTTGCTCCTGGTAAAGATAGCCCAACATTTTTTCCAGGAGTTAAAGGACCTAGAGGAGATATGTTTTTTAATGAATTTCCTTTTGGACCTGGACCTATAGACTTATTTAGTCATAACCGTCCAATGCCACTGAACAGTTTTTCTAGATCTCTAGCTCCTAATATGCTGATGAGGCCTTTTCTCCCTCAAGGTGGTTTCAATCCACTTCTTTCGGGTCCAGAGATGTTTAATGATTTGGCAGGGCTCCTCCATAATTACCCAGACGCTAATCCTAGCAACCCGATGGGTGCTCCTGCACCTGGCATGCACCCTTCTCCTGCACCGGGTATGCGACCACCCATTAGGCCTCCTCCTGGTACATGGGATGGGATGGACACAAACCCATTTCAAAGGGAATCCAAGAGGTCAAGGACTGATAGAGCTTCAGCCGACGATGATAATGGACTTGGGAGAGATCAATCATATGGGTTTGCACCACAACTTGATAGAGGTGCTTCTGGCCCACTTGCAAATGCTCAAGGTCAGAGTCACCACGATCAGAGTCGCCACGGTCCTATAGGTGCAAGGCTCCCAAGTGGGGGATCTCCTGGCCAGGGCCTTCCAGATAGTGATCACTGTTGGCGTGGCATTATTGCTAAAGGTGGAACTCCTGTATGTAATGCTCGGTGTGTGCCTATAGGGAATGGGATAGACTCTCAGCTCCCTGAAATTGTGAATTGCTCAGCAAGAACAGGACTGGATATGCTCATGAAACACTATGCAGATGCCAGCGGTTTTGACATTGTTTTCTTCTTGCCAGACAGCGAAGATGATTTCGCTTCCTACACAGAATTTCTTCATTACCTGGGTGCAAAGAATCGGGCAGGTGTTGCAAAGTTTGATGACGGGACCACTTTATTTCTGGTGCCCCCGTCAGATTTTTTAACCAAGGTCTTGAATGTCTCAGGTCCTGAACGTCTTTATGGCGTGGTTCTTAAGTTGCCAGAACAAATGCCAAGTAGTGCATTTATGCAGCAACCGCAGCAGCCCATTCCTCCATCGCAGTACATTGATAGACAGCAGTTACCTCCTCCTCAAACCGATTATCATTTTCTTTCTCAGGAAGGCCAAGTTTTGCAAATGGATTATAATAGGGTATTGCATGAGGAAATGACGCCTCATCCCCCACAATCTCTATTAACACCTACTGAAGAGTCGCAGTCAATGCAGTCTGTTCCCCAAGATTATGCAAGAAATCCTGCAGCAGTGCCACAGGTTGGAACGTCTCTAACACCTGAGCTGATTGCCACTCTAGCCGCTTTACTACCTACCAACTTGCAGTCTTTGGCTTCAACCAGTGCTCATTTACCATTAGGCTCATCTGCCCTAGGGCCAACCTCTTTTCCTGCTTCTGTAACACCAGATAAAGTGGCGTCATCACATGGATGGAGACAAGATCATCTACCCACCGTTACCAGTAATCTCTATAATGCAAGAGAGGAGCAAACAGGTCATCCGTCCCAACAGCTAGGACGTCAATTTAATACTCAGGCACCACTTATGTCTCAATTTCCGTCTTATATGAATGTTGTGAATGGGCCTGACCGCCCTGCACAAGGTGCCCTTGGTAGCACCCAAATTCAAGATCATGCTCGGAACGTGGCACAACAGGGTGCAGTTTCTTCTAGACCATTGAATAACTTTGTGATCCCGTCACAAGGTGGTCAGTTTACAGGCCCCCAGCAGAGTAACCAACACTATCAGCATGATCCTTCTCACAATCCTCAAAAGAGCTATGGGATGGTACATGCAACAGATGCTACCGGGTTCTTCCATTCGTCAGTCTTTCAGCAACCTAAACCCCCTGTTCCCTCGTCTACTATGATTCAGGGCACAAATCTATCCCAGCCACAAGTTGGCATGACATCGGTAACTGATCAAGTGAATGCAGGGTTCCCTAATCAGGTGGAACAACTACAATCTGCTCTTTCAGGTGCTGGTCAGGGCACATCGGAGGTAGAGGTAGATAAGAACCAACGATACCAATCGACCCTTCAATTTGCTGCTAGCCTACTCCTCCAGATACAACAGCAGCAGCAAGCAAATGCTCAAGCAGGGCAAGGCTCCGCTAATCAGCAATGA 3102 0.472 MPPPNKSNMVAEQSPRSPTHGGKEMDDEDGSPSHNLWVGNLPSEITDSDLMDIFAKYGALDSVTTYLSRNYAFLYFKHLEDARAAKDALQGFVLRGNPIKIEFARPAKPGKHLWVGGISTSVTKEQLEEEFLKFGKIEDFKFLRDRNSALIDYFRLEDAAAALKNLNGKRLGGEQIRVDFLRSQPSRRRENWSDFHDSRDGHFNNRRSMGLTEPLWMPPDAMRNFPESSQFGHKRHSPSQPSGGRRGDGQPSKVLWIGYPPSVQIDEHMLHNAMILFGEIERIKSFPSRNYSFVEFRSVDEARCAKEGLQGRLFNDPRIQILFSSSEFAPGKDSPTFFPGVKGPRGDMFFNEFPFGPGPIDLFSHNRPMPLNSFSRSLAPNMLMRPFLPQGGFNPLLSGPEMFNDLAGLLHNYPDANPSNPMGAPAPGMHPSPAPGMRPPIRPPPGTWDGMDTNPFQRESKRSRTDRASADDDNGLGRDQSYGFAPQLDRGASGPLANAQGQSHHDQSRHGPIGARLPSGGSPGQGLPDSDHCWRGIIAKGGTPVCNARCVPIGNGIDSQLPEIVNCSARTGLDMLMKHYADASGFDIVFFLPDSEDDFASYTEFLHYLGAKNRAGVAKFDDGTTLFLVPPSDFLTKVLNVSGPERLYGVVLKLPEQMPSSAFMQQPQQPIPPSQYIDRQQLPPPQTDYHFLSQEGQVLQMDYNRVLHEEMTPHPPQSLLTPTEESQSMQSVPQDYARNPAAVPQVGTSLTPELIATLAALLPTNLQSLASTSAHLPLGSSALGPTSFPASVTPDKVASSHGWRQDHLPTVTSNLYNAREEQTGHPSQQLGRQFNTQAPLMSQFPSYMNVVNGPDRPAQGALGSTQIQDHARNVAQQGAVSSRPLNNFVIPSQGGQFTGPQQSNQHYQHDPSHNPQKSYGMVHATDATGFFHSSVFQQPKPPVPSSTMIQGTNLSQPQVGMTSVTDQVNAGFPNQVEQLQSALSGAGQGTSEVEVDKNQRYQSTLQFAASLLLQIQQQQQANAQAGQGSANQQ* 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00101 1033 MobiDBLite consensus disorder prediction 1 37 - -
Eupl12g00101 1033 MobiDBLite consensus disorder prediction 222 253 - -
Eupl12g00101 1033 Pfam SPOC domain 528 645 IPR012921 -
Eupl12g00101 1033 PANTHER RNA RECOGNITION MOTIF-CONTAINING 16 104 - -
Eupl12g00101 1033 CDD RRM_SF 113 179 - -
Eupl12g00101 1033 Gene3D - 110 212 IPR012677 -
Eupl12g00101 1033 MobiDBLite consensus disorder prediction 889 917 - -
Eupl12g00101 1033 FunFam Flowering time control protein FPA 26 108 - -
Eupl12g00101 1033 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 183 IPR000504 GO:0003723
Eupl12g00101 1033 MobiDBLite consensus disorder prediction 455 474 - -
Eupl12g00101 1033 SUPERFAMILY RNA-binding domain, RBD 110 323 IPR035979 GO:0003676
Eupl12g00101 1033 MobiDBLite consensus disorder prediction 420 446 - -
Eupl12g00101 1033 CDD RRM_SF 36 102 - -
Eupl12g00101 1033 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 106 IPR000504 GO:0003723
Eupl12g00101 1033 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 319 IPR000504 GO:0003723
Eupl12g00101 1033 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 100 IPR000504 GO:0003723
Eupl12g00101 1033 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 177 IPR000504 GO:0003723
Eupl12g00101 1033 SMART rrm1_1 35 102 IPR000504 GO:0003723
Eupl12g00101 1033 SMART rrm1_1 112 179 IPR000504 GO:0003723
Eupl12g00101 1033 SMART rrm1_1 254 322 IPR000504 GO:0003723
Eupl12g00101 1033 MobiDBLite consensus disorder prediction 417 529 - -
Eupl12g00101 1033 SUPERFAMILY RNA-binding domain, RBD 5 108 IPR035979 GO:0003676
Eupl12g00101 1033 Gene3D - 4 109 IPR012677 -
Eupl12g00101 1033 Gene3D - 244 335 IPR012677 -
Eupl12g00101 1033 CDD SPOC_FPA-like 533 653 - -
Eupl12g00101 1033 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 326 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00101 Eupl-Chr12 3581257 3622930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00101 35 316 Eukaryotic Initiation Factors Gene Family AT2G23350 25.418 7.41e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00101 - - nnu:104598258 1399.8