Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00093 ATGATCTCGTGGTTTTCTGTCTTTCTTGGATACGGCAATTGTACTAAGCATTTCAATTTTGTTACTTTGCAGCCAAAGCAAATCCACGAGATTAAGGATTTTCTTCTCACGGCAAGAAGGAAAGATGCACGATCTGTCAAGATCAAGAGGAGCAAGGATGTGGTCAAGTTCAAGGTCCGCTGCTCCAAGTACCTATACACGCTCTGCGTGTTTGACTCAGAGAAAGCCGAGAAGTTGAAGCAATCTCTTCCTCCAGGTTTGAGTGTGCAAGACCTGTGA 279 0.4444 MISWFSVFLGYGNCTKHFNFVTLQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00093 92 PANTHER 60S RIBOSOMAL PROTEIN L38 25 91 IPR002675 GO:0003735|GO:0005840|GO:0006412
Eupl12g00093 92 FunFam 60S ribosomal protein L38 24 92 - -
Eupl12g00093 92 Pfam Ribosomal L38e protein family 25 91 IPR002675 GO:0003735|GO:0005840|GO:0006412
Eupl12g00093 92 Gene3D - 24 92 IPR038464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00093 Eupl-Chr12 3408108 3410331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00093 25 92 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 94.118 7.88e-43 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00093 K02923 - egr:120292773 135.961