Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00081 ATGGACTGCCCTTTTTTGTCTAGACAAAAGGGAGTTGGTTATTGGGATTCTCCTTCGCAAGTTCAAATGGAGAGCTTCACATCTTTGGGGGGTGAAATTGAGAATCCAACTGCTGAGGATTCATTTAACAACCTTTTAGAAGGCATGAATTTCAATACTTATGCAGAATTCTGCAGCAGCCCCTCATCTGTGGACCAGGTTTTACCCTCGTATGGTCTGTCCGCTGTTCAACCAATTCCTGGTGGCTTTGCTTCTTTTGCCCCATTTAATTTCAGAGCAGAAAGTACTAGTGTCTTCCCTGTAACAGAAAGTACTGGTGTCTTCCCTGTAAATGAGGGGGATTCTTTCAATGCGGTTGGAGACAAGATGGTATTTCAACAAACTGATACTCGGACAGATTTTCCGTTGAATTCTGATGATGCATATGAAATGGGAATTAAAAAAAGTAGTGGTTCTTTTCCCACCGCTAGCATTTCGGATATGGGGACTGGTATGATTTCAAGGCCTCTTGGGTGGTCACTTCCTGAGAAGATGCTTAGGGCATTGTCCTTGTTCAAGGAATCATCTGGAGGAGGAATTCTTGCACAAGTTTGGGTTCCTATTATGCATGGAGATAAGCTAATTTTGAGTACTTGCGAGCAACCTTATCTACTAGACCAAATGCTTGCGGGTTATCGTGAAGTATCGAGGGCATTTACTTTCTCTGCAAAAGAAGCCCCCGGTTCCTTTCTCGGGCTTCCTGGACGAGTGTTTATCTCTAGAATGCCAGAATGGACTTCGAATGTAGTTTATTATAGCAAGGCCGAGTACTTGCGTGTAAAACATGCAGTTGACCATGAAGTCCGTGGGTCTCTTGCCTTACCAATTTTCAATTCTCATGAGCAGTCGTGTTGTGCTGTATTGGAAGTTGTCACCATGAAGGAGAAACCCAATTTTGATCCAGAGATGGAAAATGTTTGTCATGCTCTTCGGGCTGTGAACTTAAGGACCATTGCATCACCTCGAGTTCATCCACAGTGCCTCTCAAAAAGTCAGAGAGCTGCCTTAGCTGAGATAGTTGATATTTTAAGAGCTATTTGTCATGCACATAGGGTGCCATTGGCCCTGACATGGATTCCCTGTAGCTACTCTGATGGAATTAATGATGAATGTATGGGAGTGGGTATGGGAGAGGGTAATACTAGTTTGAACAAGAAAAGTATATTGTGTATTGAGGATACGGCGTGTTATGTGAATAATACAGAGATGCAAGGGTTTGTGCATGCATGTGCCGAACATTACCTTGAGAAAGGGCAAGGTATTGCTGGAAAAGCACTTCAATCAAACCGTCCCTTTTTCTCCCATGATGTTAAGGGCTACGGTGTAAGAGAATATCCTCTAGTACATCATGCACGCAAGTTTGGTTTGAATGCTGCTGTTGCAATTAGGCTAAGGAGCACCTACACTGGAGAGGATGATTACATATTAGAGTTTTTTCTCCCTGTTAATTGCAAAGGAAGTACAGAGCAACAACTATTGTTAAACAGCCTTTCCAGCACCATACAAAGGATCTGTAGGAGTTTGAGAACTGTTTCAGATGCAGAATTATTTGGGGCTGGAGACTCTAAATTAGGGATTCAGAACGGAGTAGGAGCAAGCTTCCCGTTAACGGTTATTTCTGGGAAAAGCTCTCAGTCAGCGTTATCAGATAGCGAATTGGATTCGGGTGAAAGAGTGGCCTTGCATATTCCTAGTCTAGGGAGTGATGGAATGGAAGCAGATGTTCCTCATGAACAGACAAGACGGCAAGAGAAAAAGCGGAGTACAGCAGAGAAGAATATTAGCTTGAGCGTTCTTCAGCAATACTTTTCTGGGAGCCTTAAGGATGCTGCAAAAAGCATTGGTGTTTGTCCTACTACACTGAAAAGGATATGCAGACAGCATGGAATATCTAGATGGCCATCTCGCAAGATAAATAAGGTGAACCGCTCCTTGAGGAAGATACAGACTGTGATTGACTCTGTGCAAGGAGTAGAGGGTGGATTGAAGTTTGACCCCATTACCGGAGGGCTTGTGGCGGTAGCCTCCATGGTCCAAGATTTGGAGGAGCGCAACAACATTTTCTCTCTTCGCAAAAACCCGGCTGCCAGAAACTCAGAATTAGCAGCCCAAGATGTAATATCAGTATCTCATGTCCCTTGTATCTTGGGTGAGAATTCTGCTGTGAAATTGGAAAGGGATGACTGTTCTATGGGTGGGCAACAACTGGGGCCTGTAGGGAATATGCTTCTCTCTAATACAGGCAAGGGAGAAAAGGAGAGAGCGAATATTCCTCTGATCAATGGTAGTGATGTTTCTAAATTTGCTGCTTTAGATGCTGGATCATTGCAGCCAGTTAACCACGAAACTATGCCATGGGCGTTTTCTAGAGATGTCTTGCGGGATTCTGATTTTGCAAAGGAGAGGTGCAATAAATGGGGTTTGATCAAGGGTGATTTGAGTTTAGAGAGCTACGACTGCCAGGTCACGTCTCGAAACTCAAGATCTATGGCAGCAGCTGATGAAATGGATGCTGGAATTGATGGTGACGACGAGGCAGTTGAACATAACCAGCCAACCTCTTCAGGCATGACAGATTCATCAAATGGCTCAAGTTCAACGATGAATGGCAGTGCATCAAGCTCCCCGGTCTTTTGTAGACAGAAACATTCGAAAAGCAAAACATTCGTCAGAGGCAACGGATCTGCAATCACAGTGAAGGCTACTTATAAAGAAGACACAGTGAGATTTAAGTTTGGACCTTGCACAGGGTGTTTCCAATTGTTTGAGGAAGTTGGAAAGAGGTTCAAATTGCCGCCCGGGACATTCCAGCTCAAGTACCTGGATGACGAGGAGGAGTGGGTGGTGTTGTTGACCGATTCCGATTTGCAGGAATGTCTAGAGGTACTGGAGTCTATTGGGTCTCGTAGCGTTAAGCTCCTGGTTCTTGATTTGCATTGTGCAGTGGGCAGCTCTGCCAGTAGTAATTGCTTGTTGACAGGAGGCTCATAA 3030 0.4439 MDCPFLSRQKGVGYWDSPSQVQMESFTSLGGEIENPTAEDSFNNLLEGMNFNTYAEFCSSPSSVDQVLPSYGLSAVQPIPGGFASFAPFNFRAESTSVFPVTESTGVFPVNEGDSFNAVGDKMVFQQTDTRTDFPLNSDDAYEMGIKKSSGSFPTASISDMGTGMISRPLGWSLPEKMLRALSLFKESSGGGILAQVWVPIMHGDKLILSTCEQPYLLDQMLAGYREVSRAFTFSAKEAPGSFLGLPGRVFISRMPEWTSNVVYYSKAEYLRVKHAVDHEVRGSLALPIFNSHEQSCCAVLEVVTMKEKPNFDPEMENVCHALRAVNLRTIASPRVHPQCLSKSQRAALAEIVDILRAICHAHRVPLALTWIPCSYSDGINDECMGVGMGEGNTSLNKKSILCIEDTACYVNNTEMQGFVHACAEHYLEKGQGIAGKALQSNRPFFSHDVKGYGVREYPLVHHARKFGLNAAVAIRLRSTYTGEDDYILEFFLPVNCKGSTEQQLLLNSLSSTIQRICRSLRTVSDAELFGAGDSKLGIQNGVGASFPLTVISGKSSQSALSDSELDSGERVALHIPSLGSDGMEADVPHEQTRRQEKKRSTAEKNISLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLRKIQTVIDSVQGVEGGLKFDPITGGLVAVASMVQDLEERNNIFSLRKNPAARNSELAAQDVISVSHVPCILGENSAVKLERDDCSMGGQQLGPVGNMLLSNTGKGEKERANIPLINGSDVSKFAALDAGSLQPVNHETMPWAFSRDVLRDSDFAKERCNKWGLIKGDLSLESYDCQVTSRNSRSMAAADEMDAGIDGDDEAVEHNQPTSSGMTDSSNGSSSTMNGSASSSPVFCRQKHSKSKTFVRGNGSAITVKATYKEDTVRFKFGPCTGCFQLFEEVGKRFKLPPGTFQLKYLDDEEEWVVLLTDSDLQECLEVLESIGSRSVKLLVLDLHCAVGSSASSNCLLTGGS* 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00081 1009 Pfam RWP-RK domain 606 654 IPR003035 -
Eupl12g00081 1009 MobiDBLite consensus disorder prediction 855 890 - -
Eupl12g00081 1009 MobiDBLite consensus disorder prediction 587 603 - -
Eupl12g00081 1009 ProSiteProfiles RWP-RK domain profile. 588 674 IPR003035 -
Eupl12g00081 1009 ProSiteProfiles PB1 domain profile. 909 991 IPR000270 GO:0005515
Eupl12g00081 1009 CDD PB1_NLP 910 988 IPR034891 -
Eupl12g00081 1009 Gene3D - 906 990 - -
Eupl12g00081 1009 SUPERFAMILY CAD & PB1 domains 902 993 - -
Eupl12g00081 1009 MobiDBLite consensus disorder prediction 580 603 - -
Eupl12g00081 1009 SMART PB1_new 909 991 IPR000270 GO:0005515
Eupl12g00081 1009 PANTHER PROTEIN NLP8 152 1002 IPR045012 GO:0003700
Eupl12g00081 1009 MobiDBLite consensus disorder prediction 862 890 - -
Eupl12g00081 1009 Pfam PB1 domain 910 988 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00081 Eupl-Chr12 2812632 2821581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00081 1 1008 NLP Transcription Factor Family AT2G43500 49.265 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Eupl12g00081 PB1 7.1e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00081 - - nnu:104587003 1235.32